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Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research 47, W300-W307, 2019.
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structuresNucleic Acids Research 43 (W1), W306-W313, 2015.
Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics btz143, , 2019.
Assessing energy functions for flexible dockingJournal of Computational Chemistry 19, 1612–1622, 1999.
Collapse Transition of Semiflexible Polymers in 2-dimensional SystemsActa Physica Polonica 79, 601-612, 1991.
De novo simulations of the folding of GCN4 and its mutantsModeling of Biomolecular Structures and Mechanisms 8, 95–98, 1995.
A hierarchical approach to the prediction of the quaternary structure of GCN4 and its mutantsDIMACS Series in Discrete Mathematics and Theoretical Computer Science 23, 233–236, 1996.
Key Factors Governing Fibril Formation Of Proteins: Insights From Simulations And ExperimentsTask Quarterly 18, 245–254, 2014.
Method for predicting the state of association of discretized protein models. Application to leucine zippers.Biochemistry 35, 955–967, 1996.
Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipperBiophysical Journal 83, 2801–2811, 2002.
Prediction of protein secondary structure by an enhanced neural networkActa Biochimica Polonica 38, , 1991.
Prediction of protein secondary structure by neural networks: encoding short and long range patterns of amino acid packingActa Biochimica Polonica 39, 369–392, 1992.
Prediction of quaternary structure of coiled coils. Application to mutants of the GCN4 leucine zipperJournal of Molecular Biology 251, 448–67, 1995.
Prediction of the Folding Pathways and Structure of the GCN4 Leucine ZipperJournal of Molecular Biology 237, 361 - 367, 1994.
A simple technique to estimate partition functions and equilibrium constants from Monte Carlo simulationsJournal of Chemical Physics 102, 6189–6193, 1995.
Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitorsJournal of Computer-Aided Molecular Design 20, 305–319, 2006.