Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions

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Publications

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2006
High throughput method for protein structure predictionGront, D. et al.NIC Workshop 2006: From Computational Biophysics to System Biology 34, 79-82, 2006.
1997
2006
Modeling protein structure, dynamics and thermodynamics with reduced representation of conformational spaceKoliński, A. et al.NIC Workshop 2006: From Computational Biophysics to System Biology 34, 21-28, 2006.
1996
Prediction of the quaternary structure of coiled coils: GCN4 leucine zipper and its mutants.Vieth, M. et al.Proceeding of I-st Pacific Symposium on Biocomputing 653–662, 1996.
1999
2005
Exploring protein energy landscapes with hierarchical clusteringGront, D., Hansmann, U.H.E. & Koliński, A.International Journal of Quantum Chemistry 105, 826–830, 2005.
Folding of the protein domain hbSBDKouza, M. et al.Biophys J 89, 3353-61, 2005.
Folding of the protein domain hbSBDKouza, M. et al.Biophys J 89, 3353-61, 2005.
Folding of the protein domain hbSBDKouza, M. et al.Biophys J 89, 3353-61, 2005.
2012
Folding Simulations of the A and B Domains of Protein GKouza, M. & Hansmann, U.H.E.The Journal of Physical Chemistry B 116, 6645-6653, 2012.
Genomics-aided structure prediction.Sulkowska, J.I., Morcos, F., Weigt, M., Hwa, T. & Onuchic, J.N.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
2012
An Optimized Replica Exchange Molecular Dynamics ApproachKouza, M. & Hansmann, U.H.E.From Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 91-94 , 2012.
2014
Pierced Lasso Bundles are a New Class of Knot MotifsHaglund, E. et al.PLoS computational biology 10(6), , 2014.
2005
Protein structure prediction by tempering spatial constraintsGront, D., Koliński, A. & Hansmann, U.H.E.Journal of Computer-Aided Molecular Design 19, 603–8, 2005.

Pages