Publications
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Designing an Automatic Pipeline for Protein Structure Prediction Designing an Automatic Pipeline for Protein Structure PredictionFrom Computational Biophysics to Systems Biology (CBSB08) 40, 105–108, 2008.
High throughput method for protein structure predictionNIC Workshop 2006: From Computational Biophysics to System Biology 34, 79-82, 2006.
Method for low resolution prediction of small protein tertiary structureProceeding of II-nd Pacific Symposium on Biocomputing 316–327, 1997.
Modeling protein structure, dynamics and thermodynamics with reduced representation of conformational spaceNIC Workshop 2006: From Computational Biophysics to System Biology 34, 21-28, 2006.
Prediction of the quaternary structure of coiled coils: GCN4 leucine zipper and its mutants.Proceeding of I-st Pacific Symposium on Biocomputing 653–662, 1996.
Analysis and optimization of interactions between peptides mimicking the GD2 ganglioside and the monoclonal antibody 14G2aInternational Journal of Molecular Medicine 28, 47–57, 2011.
Assessing energy functions for flexible dockingJournal of Computational Chemistry 19, 1612–1622, 1999.
DNA vaccine expressing the mimotope of GD2 ganglioside induces protective GD2 cross-reactive antibody responsesCancer Research 65, 3410–8, 2005.
Effect of Finite Size on Cooperativity and Rates of Protein FoldingâThe Journal of Physical Chemistry A 110, 671-676, 2006.
Exploring protein energy landscapes with hierarchical clusteringInternational Journal of Quantum Chemistry 105, 826–830, 2005.
Folding Simulations of the A and B Domains of Protein GThe Journal of Physical Chemistry B 116, 6645-6653, 2012.
Genomics-aided structure prediction.Proceedings of the National Academy of Sciences of the United States of America 109, 10340-5, 2012.
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsProteins 27, 290–308, 1997.
New force replica exchange method and protein folding pathways probed by force-clamp techniqueThe Journal of Chemical Physics 128, 045103, 2008.
A numerical investigation into possible mechanisms by that the A629P mutant of ATP7A causes Menkes DiseasePhys Chem Chem Phys 12, 11390-7, 2010.
An Optimized Replica Exchange Molecular Dynamics ApproachFrom Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 91-94 , 2012.
Protein mechanical unfolding: Importance of non-native interactionsThe Journal of Chemical Physics 131, 215103, 2009.
Protein structure prediction by tempering spatial constraintsJournal of Computer-Aided Molecular Design 19, 603–8, 2005.