Publications
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Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubilityNucleic Acids Research 47, W300-W307, 2019.
Aggrescan3D standalone package for structure-based prediction of protein aggregation propertiesBioinformatics btz143, , 2019.
Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics 15, 3846-3859, 2018.
Combining Structural Aggregation Propensity and Stability Predictions To Redesign Protein SolubilityMolecular Pharmaceutics 15, 3846-3859, 2018.
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structuresNucleic Acids Research 43 (W1), W306-W313, 2015.
Key Factors Governing Fibril Formation Of Proteins: Insights From Simulations And ExperimentsTask Quarterly 18, 245–254, 2014.
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.Proceedings of the National Academy of Sciences of the United States of America 106, 13791-6, 2009.
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.Proceedings of the National Academy of Sciences of the United States of America 106, 13791-6, 2009.
Three dimensional model of severe acute respiratory syndrome coronavirus helicase ATPase catalytic domain and molecular design of severe acute respiratory syndrome coronavirus helicase inhibitorsJournal of Computer-Aided Molecular Design 20, 305–319, 2006.
Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipperBiophysical Journal 83, 2801–2811, 2002.
Three-dimensional modeling of and ligand docking to vitamin D receptor ligand binding domainProceedings of the National Academy of Sciences 97, 1467-1472, 2000.
Assessing energy functions for flexible dockingJournal of Computational Chemistry 19, 1612–1622, 1999.
Monte Carlo lattice dynamics and the prediction of protein foldsComputer Simulations of Biomolecular Systems. Theoretical and Experimental Applications pp, 395–429, 1997.
A hierarchical approach to the prediction of the quaternary structure of GCN4 and its mutantsDIMACS Series in Discrete Mathematics and Theoretical Computer Science 23, 233–236, 1996.
Method for predicting the state of association of discretized protein models. Application to leucine zippers.Biochemistry 35, 955–967, 1996.
Prediction of the quaternary structure of coiled coils: GCN4 leucine zipper and its mutants.Proceeding of I-st Pacific Symposium on Biocomputing 653–662, 1996.
De novo simulations of the folding of GCN4 and its mutantsModeling of Biomolecular Structures and Mechanisms 8, 95–98, 1995.
Prediction of quaternary structure of coiled coils. Application to mutants of the GCN4 leucine zipperJournal of Molecular Biology 251, 448–67, 1995.
A simple technique to estimate partition functions and equilibrium constants from Monte Carlo simulationsJournal of Chemical Physics 102, 6189–6193, 1995.
Prediction of the Folding Pathways and Structure of the GCN4 Leucine ZipperJournal of Molecular Biology 237, 361 - 367, 1994.
Prediction of protein secondary structure by neural networks: encoding short and long range patterns of amino acid packingActa Biochimica Polonica 39, 369–392, 1992.
Collapse Transition of Semiflexible Polymers in 2-dimensional SystemsActa Physica Polonica 79, 601-612, 1991.
Prediction of protein secondary structure by an enhanced neural networkActa Biochimica Polonica 38, , 1991.