ClusCo: Clustering and Comparison of Protein Models
Michał Jamróz, Andrzej Koliński
Source code license: few (but open, check COPYING* files).
26/02/13 update: clusco-0.3 ALPHA (hierarchical clustering not working!!): NEW much faster K-means clustering (on GPU) and data reduction by very fast redsvd method. (read about redsvd here)
9/10/12 update: pick.cpp code for selecting of models with Δ from pdb trajectory
10/10/12 update: get from_tra.c get particular model from multimodel pdb file