Andrzej Kolinski Research Group

Coarse-grained protein modeling

Modeling Software & Servers

Biomolecules — dynamics & interactions


High throughput method for protein structure prediction


NIC Workshop 2006: From Computational Biophysics to System Biology, Jan H. Meinke, Michael T. Zimmermann, Sandipan Mohanty, Ulrich H. E. Hansmann, Eds, John von Neumann Institute for Computing, Julich, 34:79-82, 2006


Recently several successful methods for protein structure prediction have been proposed. Next step towards modeling on a genomic scale is to combine existing tools into a single automated<br>protocol. Such methods are crucial to fill the gap between the number of currently known protein sequences and structures. Here we utilize a lattice based coarse-grained modeling algorithm<br>together with several accompanying tools to build a generalized pipeline for protein structure prediction. Our strategy was successfully applied during the CASP6 experiment.