Check out our newly developed standalone applications: CABS-dock for flexible protein-peptide docking and CABS-flex for fast modeling of protein flexibility.
Both tools offer many new functionalities in comparison to their web server counterparts and can be used in many different structural biology applications. Those interested in using the tools and their further development may contact Sebastian Kmiecik, email: sekmi@chem.uw.edu.pl
Publications:
http://biocomp.chem.uw.edu.pl/cabs-dock-standalone-toolbox-flexible-prot...
http://biocomp.chem.uw.edu.pl/cabs-flex-standalone-simulation-environmen...
Application repositories:
https://bitbucket.org/lcbio/cabsdock
https://bitbucket.org/lcbio/cabsflex