Publication Supplements

Slides & Presentations

PARAMETERS OF THE CABS MODEL

Movies

• 19n2aeta_dock.pdb.gz
• 19n2bete_dock.pdb.gz
• 2ethdn1a_dock.pdb.gz
• 2ethdn2e_dock.pdb.gz

P. Rotkiewicz, W. Sicinska, A. Kolinski and H. F. DeLuca, "Model of three-dimensional structure of vitamin D receptor and its binding mechanism with 1a,25-dihydroxivitamin D", Proteins: Structure, Function and Genetics (Proteins), (2001, submitted)

Model of three-dimensional structure of vitamin D receptor

• trans_a_1_renum.pdb
• trans_a_2_renum.pdb
• trans_e_1_renum.pdb
• trans_e_2_renum.pdb

W. Sicinska, P. Rotkiewicz, H. DeLuca, "Model of three-dimensional structure of VDR bound witch vitamin D3 analogs substituted at carbon-2", Journal of Steroid Biochemistry and Molecular Biology, (2003, in press)

Data files: models.zip

A. Kolinski, P. Rotkiewicz and J. Skolnick, "Structure of Proteins: New Approach to Molecular Modeling.", Polish J. Chem. (2000, submitted)

Structure of proteins : new approach to molecular modelling

• model_1ax8.pdb
• model_1dekB.pdb
• model_1dhs.pdb
• model_1maz.pdb

B. Ilkowski, J. Skolnick and A. Kolinski, "Helix-coil and beta sheet - coil transitions in a simplified, yet realistic protein model.", Makromol. Theory Simul. (2000, submitted)

Included are parameters of the force field used in simulations

Download gzipped TAR archive 25kB with all files inside.

A. Kolinski, B. Ilkowski and J. Skolnick, "Dynamics and Thermodynamics of Beta-Hairpin Assembly: Insights from Various Simulation Techniques.", Biophysical Journal (Biophys J), 77:2942-2952 (1999)

PARAMETERS OF THE FORCE FIELD OF SIDE-CHAIN-ONLY LATTICE MODEL.
Dynamics and thermodynamics of b-hairpin assembly: Insight from various simulation techniques.

Download gzipped TAR archive with all files inside.