Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Biomolecules — dynamics & interactions

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Publications of this author

[81]
A hierarchical approach to the prediction of the quaternary structure of GCN4 and its mutants
Author(s): M. Vieth, A. Koliński, C.L. Brooks, J. Skolnick
DIMACS Series in Discrete Mathematics and Theoretical Computer Science, 23:233–236, 1996
[80]
Prediction of the quaternary structure of coiled coils: GCN4 leucine zipper and its mutants.
Author(s): M. Vieth, A. Koliński, C.L. Brooks, J. Skolnick, L. Hunter, T.E. Klein
Proceeding of I-st Pacific Symposium on Biocomputing, 653–662, 1996
[79]
Does a backwardly read protein sequence have a unique native state?
Author(s): K.A. Olszewski, A. Koliński, J. Skolnick
Protein Engineering, 9:5–14, 1996
[78]
An algorithm for prediction of structural elements in small proteins
Author(s): A. Koliński, J. Skolnick, A. Godzik
Proceeding of I-st Pacific Symposium on Biocomputing, 446–460, 1996
[77]
On the origin of the cooperativity of protein folding: implications from model simulations
Author(s): A. Koliński, W. Galazka, J. Skolnick
Proteins, 26:271–287, 1996
[76]
Method for predicting the state of association of discretized protein models. Application to leucine zippers.
Author(s): M. Vieth, A. Koliński, J. Skolnick
Biochemistry, 35:955–967, 1996
[75]
Folding simulations and computer redesign of protein A three-helix bundle motifs
Author(s): K.A. Olszewski, A. Koliński, J. Skolnick
Proteins, 25:286–299, 1996
[74]
Computer design of idealized beta-motifs
Author(s): A. Koliński, W. Galazka, J. Skolnick
Journal of Chemical Physics, 103:10286–10297, 1995
[73]
De novo simulations of the folding of GCN4 and its mutants
Author(s): J. Skolnick, M. Vieth, A. Koliński, C.L. Brooks
Modeling of Biomolecular Structures and Mechanisms, 8:95–98, 1995
[72]
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
Author(s): A. Godzik, A. Koliński, J. Skolnick
Protein Science: a Publication of the Protein Society, 4:2107–2117, 1995
[71]
Neural network system for the evaluation of side-chain packing in protein structures
Author(s): M. Milik, A. Koliński, J. Skolnick
Protein Engineering, 8:225–236, 1995
[70]
A simple technique to estimate partition functions and equilibrium constants from Monte Carlo simulations
Author(s): M. Vieth, A. Koliński, J. Skolnick
Journal of Chemical Physics, 102:6189–6193, 1995
[69]
Prediction of quaternary structure of coiled coils. Application to mutants of the GCN4 leucine zipper
Author(s): M. Vieth, A. Koliński, C.L. Brooks, J. Skolnick
Journal of Molecular Biology, 251:448–67, 1995
[68]
A reduced model of short range interactions in polypeptide chains
Author(s): A. Koliński, M. Milik, J. Rycombel, J. Skolnick
Journal of Chemical Physics, 103:4312–4323, 1995
[67]
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme
Author(s): A. Koliński, J. Skolnick
Proteins, 18:338-52, 1994
[66]
Prediction of the Folding Pathways and Structure of the GCN4 Leucine Zipper
Author(s): M. Vieth, A. Koliński, C.L. Brooks, J. Skolnick
Journal of Molecular Biology, 237:361 - 367, 1994
[65]
De Novo Prediction of Protein Tertiary Structure
Author(s): J. Skolnick, A. Koliński
Polymer Preprints, 35:82–83, 1994
[64]
Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin
Author(s): A. Koliński, J. Skolnick
Proteins: Structure, Function, Bioinformatics, 18:353–366, 1994
[63]
Dynamics of star branched polymers in a matrix of linear chains—a Monte Carlo study
Author(s): A. Sikorski, A. Koliński, J. Skolnick
Macromolecular Theory and Simulations, 3:715–729, 1994
[62]
A method for prediction of protein structure from sequence
Author(s): J. Skolnick, A. Koliński, C.L. Brooks, A. Godzik, A. Rey
Current Biology, 3:414–423, 1993
[61]
From independent modules to molten globules: observations on the nature of protein folding intermediates
Author(s): J. Skolnick, A. Koliński, A. Godzik
Proceedings of the National Academy of Sciences of the United States of America, 90:2099–100, 1993
[60]
De novo and inverse folding predictions of protein structure and dynamics
Author(s): A. Godzik, A. Koliński, J. Skolnick
Journal of Computer-Aided Molecular Design, 7:397–438, 1993
[59]
A general method for the prediction of the three dimensional structure and folding pathway of globular proteins: Application to designed helical proteins
Author(s): A. Koliński, A. Godzik, J. Skolnick
The Journal of Chemical Physics, 98:7420, 1993
[58]
Lattice representations of globular proteins: How good are they?
Author(s): A. Godzik, A. Koliński, J. Skolnick
Journal of Computational Chemistry, 14:1194-1202 , 1993
[57]
Comment on "Local knot model of entangled polymer chains"
Author(s): A. Koliński, J. Skolnick
The Journal of Physical Chemistry, 97:3450, 1993

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