Andrzej Kolinski Research Group

Coarse-grained protein modeling

Read our new review on coarse-grained modeling

Modeling Software & Servers

Try the CABSdock for protein-peptide docking

Biomolecules — dynamics & interactions

Read relevant publications
0
-1
-2
-3
Previous Pause Next

Publications

Pages

[49]
Coarse-Grained Modeling of Protein Dynamics
Author(s): S. Kmiecik, J. Wabik, M. Kolinski, M. Kouza, A. Koliński
Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes, Springer Series in Bio-/Neuroinformatics, Adam Liwo, Ed., 1:55-79, 2014
[48]
Mechanism of Folding and Binding of an Intrinsically Disordered Protein as Revealed by Ab Initio Simulations
Author(s): M. Kurcinski, A. Koliński, S. Kmiecik
Journal of Chemical Theory and Computation, 10:2224–2231, 2014
[47]
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS model
Author(s): M. Jamroz, A. Koliński, S. Kmiecik
Protein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed., 1137:235-250, 2014
[46]
CABS-flex: server for fast simulation of protein structure fluctuations
Author(s): M. Jamroz, A. Koliński, S. Kmiecik
Nucleic Acids Research, 41:W427-W431, 2013
[45]
Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics
Author(s): J. Wabik, S. Kmiecik, D. Gront, M. Kouza, A. Koliński
International Journal of Molecular Sciences, 14:9893–9905, 2013
[44]
Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-Field
Author(s): M. Jamroz, M. Orozco, A. Koliński, S. Kmiecik
Journal of Chemical Theory and Computation, 9:119 - 125, 2013
[43]
Knotting pathways in proteins.
Author(s): J.I. Sulkowska, J.K. Noel, C.A. Ramírez-Sarmiento, E.J. Rawdon, K.C. Millett, J.N. Onuchic
Biochemical Society Transactions, 41:523-7, 2013
[42]
Energy landscape of knotted protein folding.
Author(s): J.I. Sulkowska, J.K. Noel, J.N. Onuchic
Proceedings of the National Academy of Sciences of the United States of America, 109:17783-8, 2012
[41]
From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A
Author(s): S. Kmiecik, D. Gront, M. Kouza, A. Koliński
The Journal of Physical Chemistry B, 116:7026–32, 2012
[40]
Genomics-aided structure prediction.
Author(s): J.I. Sulkowska, F. Morcos, M. Weigt, T. Hwa, J.N. Onuchic
Proceedings of the National Academy of Sciences of the United States of America, 109:10340-5, 2012

Pages