Andrzej Kolinski Research Group

Coarse-grained protein modeling

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Biomolecules — dynamics & interactions

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Publications

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[39]
Structural features that predict real-value fluctuations of globular proteins
Author(s): M. Jamroz, A. Koliński, D. Kihara
Proteins, 80:1425–35, 2012
[38]
BSDB: the biomolecule stretching database.
Author(s): M. Sikora, J.I. Sulkowska, B.S. Witkowski, M. Cieplak
Nucleic Acids Research, 39:D443-50, 2011
[37]
Computational study of binding of epothilone A to β-tubulin
Author(s): K. Kamel, A. Koliński
Acta Biochimica Polonica, 58:255–60, 2011
[36]
Multiscale approach to protein folding dynamics
Author(s): S. Kmiecik, M. Jamroz, A. Koliński, A. Koliński
Multiscale Approaches to Protein Modeling, 281-294, 2011
[35]
Simulation of chaperonin effect on protein folding: a shift from nucleation-condensation to framework mechanism
Author(s): S. Kmiecik, A. Koliński
Journal of the American Chemical Society, 133:10283–9, 2011
[34]
Coarse-grained Monte Carlo simulations of mucus: structure, dynamics, and thermodynamics
Author(s): P. Gniewek, A. Koliński
Biophysical Journal, 99:3507–16, 2010
[33]
Slipknotting upon native-like loop formation in a trefoil knot protein.
Author(s): J.K. Noel, J.I. Sulkowska, J.N. Onuchic
Proceedings of the National Academy of Sciences of the United States of America, 107:15403-8, 2010
[32]
A Stevedore's protein knot.
Author(s): D. Bölinger, J.I. Sulkowska, H.P. Hsu, L.A. Mirny, M. Kardar, J.N. Onuchic, P. Virnau
PLoS Comput Biol, 6:e1000731, 2010
[31]
Jamming proteins with slipknots and their free energy landscape.
Author(s): J.I. Sulkowska, P. Sułkowski, J.N. Onuchic
Phys Rev Lett, 103:268103, 2009
[30]
Mechanical strength of 17,134 model proteins and cysteine slipknots.
Author(s): M. Sikora, J.I. Sulkowska, M. Cieplak
PLoS Comput Biol, 5:e1000547, 2009

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