An efficient Monte Carlo model of protein chains. Modeling the short-range correlations between side group centers of massThe Journal of Physycal Chemistry B 102, 4628–4637, 1998.
Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignmentsJournal of Molecular Biology 277, 419–448, 1998.
Monte Carlo studies of the thermodynamics and kinetics of reduced protein models: Application to small helical, β, and α / β proteinsJournal of Chemical Physics 108, 2608–2617, 1998.
Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulationsProceedings of the National Academy of Sciences of the United States of America 95, 1020–1025, 1998.
Reduced protein models and their application to the protein folding problemJournal of Biomolecular Structure and Dynamics 16, 381–396, 1998.
Algorithm for rapid reconstruction of protein backbone from alpha carbon coordinatesJournal of Computational Chemistry 18, 80–85, 1997.
Collapse transitions in protein-like lattice polymers: The effect of sequence patternsBiopolymers 42, 537–548, 1997.
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?Protein Science 6, 676–688, 1997.
Determinants of secondary structure of polypeptide chains: Interplay between short range and burial interactionsJournal of Chemical Physics 107, 953–964, 1997.
High coordination lattice models of protein structure, dynamics and thermodynamicsActa Biochim Polonica 44, 389–422, 1997.
Method for low resolution prediction of small protein tertiary structureProceeding of II-nd Pacific Symposium on Biocomputing 316–327, 1997.
A method for the prediction of surface "U"-turns and transglobular connections in small proteinsProteins 27, 290–308, 1997.
MONSSTER: a method for folding globular proteins with a small number of distance restraintsJournal of Molecular Biology 265, 217–241, 1997.
An algorithm for prediction of structural elements in small proteinsProceeding of I-st Pacific Symposium on Biocomputing 446–460, 1996.
Does a backwardly read protein sequence have a unique native state?Protein Engineering 9, 5–14, 1996.
Folding simulations and computer redesign of protein A three-helix bundle motifsProteins 25, 286–299, 1996.
A hierarchical approach to the prediction of the quaternary structure of GCN4 and its mutantsDIMACS Series in Discrete Mathematics and Theoretical Computer Science 23, 233–236, 1996.
Lattice models of protein folding. Dynamics and thermodynamicsLattice models of protein folding. Dynamics and thermodynamics, Austin, TX, Chapman & Hall. (Chapman & Hall.: Austin, TX, 1996).
Method for predicting the state of association of discretized protein models. Application to leucine zippers.Biochemistry 35, 955–967, 1996.
On the origin of the cooperativity of protein folding: implications from model simulationsProteins 26, 271–287, 1996.