Coarse-grained simulations of membrane insertion and folding of small helical proteins using CABS modelJournal of Chemical Information and Modeling 56, 2207–2215, 2016.
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structuresNucleic Acids Research 43 (W1), W306-W313, 2015.
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding siteNucleic Acids Research 43 (W1), W419-W424, 2015.
CABS-flex predictions of protein flexibility compared with NMR ensemblesBioinformatics 30, 2150-2154, 2014.
Coarse-grained modeling of protein structure, dynamics and protein-protein interactionsTASK Quarterly 18, 219–229, 2014.
Mechanical unfolding of DDFLN4 studied by the coarse-grained knowledge-based CABS modelTASK Quarterly 18, 373–378, 2014.
Protocols for efficient simulations of long time protein dynamics using coarse-grained CABS modelProtein structure prediction (3rd Edition), Methods in Molecular Biology, Daisuke Kihara, Ed. 1137, 235-250, 2014.
CABS-flex: server for fast simulation of protein structure fluctuationsNucleic Acids Research 41, W427-W431, 2013.
CABS-fold: server for the de novo and consensus-based prediction of protein structureNucleic Acids Research 41, W406-W411, 2013.
Protein Structure Prediction Using CABS – A Consensus ApproachFrom Computational Biophysics to Systems Biology (CBSB11) Proceedings 8, 29–32, 2012.
Multiscale approach to protein folding dynamicsMultiscale Approaches to Protein Modeling 281-294, 2011.
Designing an Automatic Pipeline for Protein Structure Prediction Designing an Automatic Pipeline for Protein Structure PredictionFrom Computational Biophysics to Systems Biology (CBSB08) 40, 105–108, 2008.