Project name: 20190218h8C12woDyn [mutate: VH92K, VH120K, VH206K]

Status: done

submitted: 2019-02-19 10:18:05, status changed: 2019-02-19 10:27:18
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Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGFSLNSFGWSWIRQPPGKGLEWIGYIWAGKNTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARAGYGNSLDYWGQGTTLTVSSDIVMTQSPDSLAVSLGERATINCKSSQSLLNSGNQRNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQNNYYFPLTFGTGTKLEIK
Distance of aggregation 5 Å
Dynamic mode No
Mutated residues VH92K, VH120K, VH206K
Energy difference between WT (input) and mutated protein (by FoldX) 0.317592 kcal/mol

Changes in protein stability upon mutation are calculated using the FoldX forcefield. Computational prediction of protein stability is used with the intention of preventing the experimental characterization of proteins bearing mutations that significantly destabilize their structure. Mutations resulting in a predicted reduction in protein stability ≥ 1 kcal/mol are considered disruptive.

Show buried residues

Minimal score value
-2.2445
Maximal score value
1.4972
Average score
-0.2974
Total score value
-68.4092

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1983
2 V H 0.0000
3 Q H -1.1983
4 L H 0.0000
5 Q H -0.7616
6 E H 0.0000
7 S H -0.2494
8 G H -0.5232
9 P H -0.3702
10 G H -0.1582
11 L H 1.2580
12 V H 0.0000
13 K H -1.6675
14 P H -0.4934
15 S H -0.4175
16 E H -0.8245
17 T H -0.2123
18 L H 0.0000
19 S H -0.3001
20 L H 0.0000
21 T H -0.0230
22 C H 0.0000
23 T H -0.0474
24 V H 0.0000
25 S H -0.2830
26 G H -0.4508
27 F H 0.1799
28 S H -0.0289
29 L H 0.0000
30 N H -1.0605
31 S H -0.2295
32 F H 0.7313
33 G H 0.0000
34 W H 0.0000
35 S H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.1346
40 P H -0.1014
41 P H -0.3468
42 G H -0.8280
43 K H -1.7979
44 G H -0.3865
45 L H 0.0000
46 E H -0.5577
47 W H 0.0000
48 I H 0.0000
49 G H 0.0000
50 Y H 0.1570
51 I H 0.0000
52 W H 0.5093
53 A H -0.0586
54 G H -0.7674
55 K H -2.0205
56 N H -1.5913
57 T H -0.3575
58 N H -0.5086
59 Y H 0.1544
60 N H -0.1073
61 P H -0.2549
62 S H -0.2482
63 L H 0.0000
64 K H -1.7391
65 S H -0.5936
66 R H -0.4175
67 V H 0.0000
68 T H -0.0263
69 I H 0.0000
70 S H -0.1101
71 V H 0.0979
72 D H -0.5079
73 T H -0.2190
74 S H -0.5345
75 K H -1.7854
76 N H -0.6099
77 Q H -0.2670
78 F H 0.0000
79 S H -0.0591
80 L H 0.0000
81 K H -0.9470
82 L H 0.0000
83 S H -0.1451
84 S H -0.2586
85 V H 0.0000
86 T H -0.0421
87 A H 0.0593
88 A H 0.0691
89 D H 0.0000
90 T H -0.0183
91 A H 0.0000
92 K H -0.8539 mutated: VH92K
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 R H 0.0000
98 A H 0.0000
99 G H 0.1675
100 Y H 1.2184
101 G H -0.2291
102 N H 0.0000
103 S H -0.0249
104 L H 0.0000
105 D H -1.4449
106 Y H 0.1100
107 W H 0.2289
108 G H 0.0000
109 Q H -1.1983
110 G H 0.0000
111 T H -0.0211
112 T H -0.1785
113 L H 0.0000
114 T H -0.0276
115 V H 0.0000
116 S H -0.1472
117 S H -0.2329
118 D H -1.7526
119 I H -0.4396
120 K H -1.6634 mutated: VH120K
121 M H 0.0000
122 T H -0.0928
123 Q H -0.1796
124 S H -0.2607
125 P H -0.4741
126 D H -1.8447
127 S H -0.6109
128 L H 0.2873
129 A H -0.3031
130 V H 0.0000
131 S H -0.0010
132 L H 1.3619
133 G H -0.5356
134 E H -2.2445
135 R H -2.1936
136 A H 0.0000
137 T H -0.0444
138 I H 0.0000
139 N H -0.9045
140 C H 0.0000
141 K H -1.4181
142 S H 0.0000
143 S H -0.3936
144 Q H -1.2543
145 S H -0.3628
146 L H 0.0000
147 L H 0.3796
148 N H -0.1560
149 S H -0.4732
150 G H -0.7087
151 N H -1.4291
152 Q H -1.6059
153 R H -1.1931
154 N H -0.2031
155 Y H 0.1824
156 L H 0.0000
157 T H 0.0000
158 W H 0.0000
159 Y H 0.0000
160 Q H 0.0000
161 Q H 0.0000
162 K H -0.7732
163 P H -0.4722
164 G H -0.7331
165 Q H -1.2954
166 P H -0.2816
167 P H 0.0000
168 K H -1.4764
169 L H -0.1038
170 L H 0.0000
171 I H 0.0000
172 Y H 0.2410
173 W H 0.4203
174 A H 0.0000
175 S H -0.2199
176 T H -0.2010
177 R H -0.8519
178 E H -0.7330
179 S H -0.4000
180 G H -0.5053
181 V H 0.0000
182 P H -0.4130
183 D H -1.8597
184 R H -0.6365
185 F H 0.0000
186 S H -0.1004
187 G H -0.1332
188 S H -0.2634
189 G H -0.3037
190 S H -0.2690
191 G H -0.1381
192 T H -0.3257
193 D H -1.6760
194 F H 0.0000
195 T H -0.1334
196 L H 0.0000
197 T H -0.0242
198 I H 0.0000
199 S H -0.3851
200 S H -0.5569
201 L H 0.0000
202 Q H -0.4841
203 A H -0.3823
204 E H -1.8124
205 D H 0.0000
206 K H -1.2307 mutated: VH206K
207 A H 0.0000
208 V H 0.0422
209 Y H 0.0000
210 Y H 0.0000
211 C H 0.0000
212 Q H 0.0000
213 N H 0.0000
214 N H -0.1013
215 Y H 0.4350
216 Y H 1.4972
217 F H 0.9958
218 P H 0.1588
219 L H 0.0000
220 T H 0.0232
221 F H 0.1968
222 G H 0.0000
223 T H -0.0876
224 G H -0.0691
225 T H 0.0000
226 K H -1.0981
227 L H 0.0000
228 E H -1.6744
229 I H 0.1400
230 K H -1.5599

 

Laboratory of Theory of Biopolymers 2015