Project name: rbd9 [mutate: FC486A, NC487K, YC489L, YC449K, LC452R, EC484R]

Status: done

submitted: 2021-09-14 22:33:02, status changed: 2021-09-14 22:41:35
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Chain sequence(s) C: TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP
Distance of aggregation 5 Å
Dynamic mode No
Mutated residues FC486A, NC487K, YC489L, YC449K, LC452R, EC484R
Energy difference between WT (input) and mutated protein (by FoldX) 0.834583 kcal/mol

Changes in protein stability upon mutation are calculated using the FoldX forcefield. Computational prediction of protein stability is used with the intention of preventing the experimental characterization of proteins bearing mutations that significantly destabilize their structure. Mutations resulting in a predicted reduction in protein stability ≥ 1 kcal/mol are considered disruptive.

Show buried residues

Minimal score value
-2.1282
Maximal score value
1.738
Average score
-0.2519
Total score value
-49.1201

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
333 T C -0.3035
334 N C -0.9920
335 L C 1.3270
336 C C 0.3527
337 P C -0.0218
338 F C 0.1387
339 G C -0.6386
340 E C -1.8831
341 V C 0.0000
342 F C 0.0000
343 N C -1.2701
344 A C -0.2307
345 T C -0.4052
346 R C -1.8570
347 F C 0.0000
348 A C 0.0050
349 S C -0.0206
350 V C 0.0000
351 Y C 0.1394
352 A C 0.0341
353 W C 0.0000
354 N C -1.4285
355 R C -1.2266
356 K C -1.3025
357 R C -1.9796
358 I C 0.0000
359 S C -0.3248
360 N C -1.2898
361 C C 0.0000
362 V C 0.7176
363 A C -0.1323
364 D C -1.4741
365 Y C 0.0000
366 S C 0.1350
367 V C 1.7380
368 L C 0.0000
369 Y C 1.0797
370 N C -1.0430
371 S C -0.2958
372 A C 0.0061
373 S C -0.1519
374 F C 0.2138
375 S C -0.1517
376 T C 0.0480
377 F C 0.3447
378 K C -1.1161
379 C C 0.0131
380 Y C 0.4301
381 G C -0.3033
382 V C 0.2238
383 S C -0.0363
384 P C -0.0605
385 T C -0.3870
386 K C -1.7129
387 L C 0.0000
388 N C -0.8262
389 D C -1.7592
390 L C 0.3598
391 C C 0.3872
392 F C 0.2658
393 T C 0.0000
394 N C -0.1758
395 V C 0.0000
396 Y C -0.0700
397 A C 0.0000
398 D C 0.0000
399 S C 0.0000
400 F C 0.0000
401 V C 0.0000
402 I C 0.0000
403 R C -0.2953
404 G C -0.4264
405 D C -1.4759
406 E C 0.0000
407 V C -0.1275
408 R C -1.8303
409 Q C -0.4724
410 I C 0.0000
411 A C -0.0030
412 P C -0.3343
413 G C -0.5576
414 Q C -0.5442
415 T C -0.1713
416 G C -0.3504
417 K C -1.2949
418 I C 0.0000
419 A C 0.0000
420 D C -0.3202
421 Y C 0.1983
422 N C 0.0000
423 Y C 0.0000
424 K C -0.5380
425 L C 0.0000
426 P C -0.3687
427 D C -2.1282
428 D C -2.1159
429 F C 0.0000
430 T C -0.1233
431 G C 0.0000
432 C C 0.0000
433 V C 0.0000
434 I C 0.0000
435 A C 0.0000
436 W C 0.0631
437 N C -0.4061
438 S C 0.0000
439 N C -0.4797
440 N C -1.0368
441 L C 1.3163
442 D C 0.0000
443 S C -0.3503
444 K C -1.3942
445 V C 1.3726
446 G C -0.1395
447 G C 0.0000
448 N C -0.6479
449 K C -1.9559 mutated: YC449K
450 N C -1.5833
451 Y C 0.0000
452 R C -0.9806 mutated: LC452R
453 Y C 0.0000
454 R C 0.0000
455 L C 0.3063
456 F C 0.3950
457 R C -0.6320
458 K C -1.8120
459 S C -0.7586
460 N C -1.3370
461 L C 0.0000
462 K C -1.7192
463 P C -0.3622
464 F C 0.5104
465 E C -0.5880
466 R C -1.4734
467 D C 0.0000
468 I C 1.1922
469 S C 0.0890
470 T C -0.4255
471 E C -1.7825
472 I C -0.0084
473 Y C 0.1410
474 Q C -1.0929
475 A C -0.3777
476 G C -0.3774
477 S C -0.2553
478 T C -0.1565
479 P C -0.2530
480 C C -0.2006
481 N C -1.3449
482 G C -0.3794
483 V C 1.3461
484 R C -1.5931 mutated: EC484R
485 G C -0.7904
486 A C -0.3375 mutated: FC486A
487 K C -1.6900 mutated: NC487K
488 C C -0.4284
489 L C 0.7606 mutated: YC489L
490 F C 1.2873
491 P C 0.0000
492 L C 0.0395
493 Q C -0.6579
494 S C -0.3229
495 Y C 0.0000
496 G C -0.1024
497 F C 0.0000
498 Q C -0.5508
499 P C -0.2589
500 T C -0.1461
501 N C -0.3599
502 G C -0.1849
503 V C 1.6540
504 G C 0.2247
505 Y C 0.3907
506 Q C -0.0543
507 P C 0.0000
508 Y C 0.0839
509 R C 0.0000
510 V C 0.0000
511 V C 0.0000
512 V C 0.0000
513 L C 0.0000
514 S C -0.0208
515 F C 0.0000
516 E C -0.4525
517 L C 1.6982
518 L C 1.6525
519 H C -0.7003
520 A C -0.2035
521 P C -0.2452
522 A C 0.0016
523 T C -0.0151
524 V C 0.0000
525 C C 0.3729
526 G C -0.1342
527 P C -0.2677

 

Laboratory of Theory of Biopolymers 2015