Project name: 4r wt [mutate: MA72D, LA285D, YA206D, VA208D]

Status: done

submitted: 2018-11-12 10:51:12, status changed: 2018-11-12 11:07:01
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Chain sequence(s) A: MRSGSHHHHHHRSDITSLYKKAGSAAAPFTMENLYFQSYQGNSDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRRLTWEYCDVPSCSTCGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP
Distance of aggregation 10 Å
Dynamic mode No
Mutated residues MA72D, LA285D, YA206D, VA208D
Energy difference between WT (input) and mutated protein (by FoldX) -1.3067 kcal/mol

Changes in protein stability upon mutation are calculated using the FoldX forcefield. Computational prediction of protein stability is used with the intention of preventing the experimental characterization of proteins bearing mutations that significantly destabilize their structure. Mutations resulting in a predicted reduction in protein stability ≥ 1 kcal/mol are considered disruptive.

Show buried residues

Minimal score value
-3.7129
Maximal score value
1.643
Average score
-0.6722
Total score value
-262.84

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.0832
2 R A -1.5366
3 S A -0.6503
4 G A -0.5207
5 S A -0.3372
6 H A 0.0000
7 H A -0.5494
8 H A -0.7122
9 H A -1.1304
10 H A -1.8419
11 H A -1.6278
12 R A -1.7657
13 S A 0.0000
14 D A 0.0000
15 I A 0.8741
16 T A 0.0586
17 S A 0.1158
18 L A 0.2272
19 Y A 0.0000
20 K A -1.5254
21 K A -2.2763
22 A A -1.2246
23 G A -1.3128
24 S A -0.8783
25 A A 0.0000
26 A A 0.0121
27 A A 0.4178
28 P A -0.0139
29 F A 0.0000
30 T A -0.6209
31 M A -0.5233
32 E A -1.9851
33 N A -1.3345
34 L A 0.1384
35 Y A 0.8278
36 F A 0.1356
37 Q A -0.9128
38 S A -1.0304
39 Y A 0.0000
40 Q A 0.0000
41 G A -0.6842
42 N A -0.9181
43 S A 0.0000
44 D A -0.3436
45 C A 0.3601
46 Y A 1.0782
47 F A 0.0000
48 G A 0.0000
49 N A 0.0000
50 G A 0.0000
51 S A 0.0000
52 A A -0.9921
53 Y A 0.0000
54 R A -0.8042
55 G A -0.6622
56 T A -0.3871
57 H A -0.2309
58 S A -0.1045
59 L A -0.2607
60 T A 0.0000
61 E A -2.1827
62 S A -1.3947
63 G A -1.1671
64 A A -0.8145
65 S A -0.2628
66 C A 0.0000
67 L A 0.0347
68 P A -0.8592
69 W A 0.0000
70 N A -1.8188
71 S A -0.9196
72 D A -1.1561 mutated: MA72D
73 I A 0.7435
74 L A 0.0000
75 I A 0.0208
76 G A -0.4820
77 K A -0.8596
78 V A 0.4524
79 Y A 0.9141
80 T A 0.3819
81 A A 0.0289
82 Q A -0.2354
83 N A -0.4155
84 P A -0.5127
85 S A -0.9419
86 A A 0.0000
87 Q A 0.0000
88 A A 0.0000
89 L A 0.0000
90 G A 0.0000
91 L A 0.0000
92 G A -1.5609
93 K A -2.3749
94 H A -1.3857
95 N A 0.0000
96 Y A -0.2162
97 C A 0.0000
98 R A 0.0000
99 N A 0.0000
100 P A -1.1539
101 D A -2.0428
102 G A -1.6743
103 D A -1.3116
104 A A -0.8229
105 K A -0.9754
106 P A 0.0000
107 W A -0.1517
108 C A 0.0000
109 H A 0.0000
110 V A 0.0000
111 L A -1.0581
112 K A -2.5239
113 N A -3.0563
114 R A -3.4501
115 R A -2.9992
116 L A -1.1067
117 T A -0.5935
118 W A 0.1580
119 E A -0.5992
120 Y A -0.2876
121 C A 0.0000
122 D A -1.4628
123 V A 0.0000
124 P A -0.2602
125 S A -0.1200
126 C A 0.0649
127 S A 0.0000
128 T A 0.0000
129 C A 0.0000
130 G A -0.1009
131 L A 0.2585
132 R A 0.0000
133 Q A -0.5889
134 Y A 0.4575
135 S A -0.1463
136 Q A -0.8997
137 P A -1.5021
138 Q A -2.0361
139 F A -1.0260
140 R A -1.1925
141 I A 0.9561
142 K A 0.4821
143 G A -0.1232
144 G A 0.1952
145 L A 1.6430
146 F A 0.9022
147 A A -0.2751
148 D A -1.6753
149 I A 0.0000
150 A A -0.4045
151 S A 0.0000
152 H A 0.0000
153 P A 0.0000
154 W A 0.0000
155 Q A 0.0000
156 A A 0.0000
157 A A 0.0000
158 I A 0.0000
159 F A 0.0000
160 A A 0.0000
161 K A -2.7665
162 H A -2.8772
163 R A -3.4820
164 R A -3.7129
165 S A -2.0558
166 P A -1.6079
167 G A -2.2301
168 E A -2.8108
169 R A -2.3675
170 F A -0.8435
171 L A -0.1018
172 C A 0.0000
173 G A 0.0000
174 G A 0.0000
175 I A 0.0000
176 L A 0.0000
177 I A 0.0000
178 S A -0.7499
179 S A -1.2382
180 C A 0.0000
181 W A 0.0000
182 I A 0.0000
183 L A 0.0000
184 S A 0.0000
185 A A 0.0000
186 A A 0.0000
187 H A -1.4035
188 C A -0.5003
189 F A 0.0000
190 Q A 0.0000
191 E A -2.6278
192 R A -2.6088
193 F A -1.6855
194 P A -1.4615
195 P A -1.7737
196 H A -1.9405
197 H A -2.1413
198 L A 0.0000
199 T A 0.0000
200 V A 0.0000
201 I A 0.0000
202 L A -0.3023
203 G A 0.0000
204 R A -1.5434
205 T A -1.5415
206 D A -2.4194 mutated: YA206D
207 R A -2.0790
208 D A -2.1925 mutated: VA208D
209 V A -0.6296
210 P A -0.8932
211 G A -1.5109
212 E A -2.4612
213 E A -1.8788
214 E A -2.6850
215 Q A -2.4501
216 K A -2.3205
217 F A 0.0000
218 E A -3.1734
219 V A 0.0000
220 E A -2.3945
221 K A -1.8549
222 Y A -0.4877
223 I A -0.3977
224 V A -0.6665
225 H A -1.4536
226 K A -2.6193
227 E A -2.7387
228 F A -2.1422
229 D A -2.5411
230 D A -3.1155
231 D A -2.9958
232 T A -1.4587
233 Y A 0.0000
234 D A -1.9097
235 N A -1.7813
236 D A 0.0000
237 I A 0.0000
238 A A 0.0000
239 L A 0.0000
240 L A 0.0000
241 Q A 0.0000
242 L A 0.0000
243 K A -2.7919
244 S A -2.3593
245 D A -3.3579
246 S A 0.0000
247 S A 0.0000
248 R A -2.3790
249 C A -1.7150
250 A A -1.3067
251 Q A -2.2567
252 E A -2.0880
253 S A -1.5313
254 S A 0.0000
255 V A 0.4974
256 V A 0.0000
257 R A -0.8554
258 T A 0.0000
259 V A 0.0000
260 C A 0.3626
261 L A 0.1985
262 P A 0.0000
263 P A -0.6558
264 A A -1.1904
265 D A -2.1339
266 L A -1.0342
267 Q A -1.4732
268 L A 0.0000
269 P A -1.6984
270 D A -2.1972
271 W A -0.9826
272 T A -0.7671
273 E A -1.0690
274 C A 0.0000
275 E A 0.0000
276 L A 0.0000
277 S A 0.0000
278 G A 0.0000
279 Y A 0.0000
280 G A 0.0000
281 K A -1.3144
282 H A -1.3961
283 E A -2.3971
284 A A -1.5617
285 D A -1.8915 mutated: LA285D
286 S A -0.9133
287 P A 0.0922
288 F A 1.1905
289 Y A -0.1423
290 S A -0.8747
291 E A 0.0000
292 R A -1.7753
293 L A 0.0000
294 K A 0.0127
295 E A 0.0000
296 A A 0.0000
297 H A -0.1675
298 V A 0.0000
299 R A -0.7854
300 L A 0.0000
301 Y A 0.0000
302 P A -1.0303
303 S A -1.2110
304 S A -1.2763
305 R A -2.4158
306 C A 0.0000
307 T A -0.4399
308 S A -0.3425
309 Q A 0.0000
310 H A 0.0000
311 L A 0.6102
312 L A 1.5039
313 N A -0.0629
314 R A -0.4655
315 T A 0.3742
316 V A 1.5689
317 T A 0.0843
318 D A -1.4678
319 N A 0.0000
320 M A 0.0000
321 L A -0.1333
322 C A 0.0000
323 A A 0.0000
324 G A 0.0000
325 D A -2.0254
326 T A -1.2341
327 R A 0.0000
328 S A -1.2758
329 G A -1.9046
330 G A -1.7877
331 P A -1.4906
332 Q A -1.8729
333 A A -0.9809
334 N A -0.5647
335 L A 0.6907
336 H A -0.0503
337 D A -0.2450
338 A A -0.1408
339 C A -0.6152
340 Q A 0.0000
341 G A 0.0000
342 D A 0.0000
343 S A -0.0903
344 G A 0.0000
345 G A 0.0000
346 P A 0.0000
347 L A 0.0000
348 V A 0.0000
349 C A 0.0000
350 L A -1.2794
351 N A 0.0000
352 D A -2.5433
353 G A -1.8089
354 R A -1.4612
355 M A 0.0000
356 T A 0.0000
357 L A 0.0000
358 V A -0.0045
359 G A 0.0000
360 I A 0.0000
361 I A 0.0000
362 S A -0.3167
363 W A -0.1775
364 G A -0.3218
365 L A 0.3629
366 G A -0.7153
367 C A 0.0000
368 G A -1.2200
369 Q A -1.7692
370 K A -1.2473
371 D A -1.7846
372 V A 0.0000
373 P A 0.0000
374 G A 0.0000
375 V A 0.0000
376 Y A 0.0000
377 T A 0.0000
378 K A -0.4020
379 V A 0.0000
380 T A 0.0000
381 N A 0.0000
382 Y A 0.0000
383 L A 0.0000
384 D A -1.5127
385 W A 0.0000
386 I A 0.0000
387 R A -2.9048
388 D A -3.1396
389 N A -2.1021
390 M A 0.0000
391 R A -2.8443

 

Laboratory of Theory of Biopolymers 2015