Project name: Mutant_aggregation

Status: done

submitted: 2018-12-13 10:57:13, status changed: 2018-12-13 11:09:03
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Chain sequence(s) A: RKTNQLQYMQNVVVKTLWKHQFAWPFYQPVVDDAAIIKKLLNNLLPPDDYYHHKKIIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMMPQEE
B: MPEVSNPSKPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQE
Distance of aggregation 5 Å
Dynamic mode No
Mutated residues MA108L
Energy difference between WT (input) and mutated protein (by FoldX) 0.942661 kcal/mol

Changes in protein stability upon mutation are calculated using the FoldX forcefield. Computational prediction of protein stability is used with the intention of preventing the experimental characterization of proteins bearing mutations that significantly destabilize their structure. Mutations resulting in a predicted reduction in protein stability ≥ 1 kcal/mol are considered disruptive.

Show buried residues

Minimal score value
-2.223
Maximal score value
1.5622
Average score
-0.3252
Total score value
-75.4465

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
34 R A -1.8867
35 K A -0.5738
36 T A -0.2599
37 N A -1.1228
38 Q A -0.4419
39 L A 0.0000
40 Q A -0.3734
41 Y A 0.0850
42 M A 0.0000
43 Q A -0.3524
44 N A -1.0440
45 V A 0.2804
46 V A 0.0000
47 V A 0.0000
48 K A -1.2935
49 T A -0.2552
50 L A 0.0000
51 W A -0.0375
52 K A -1.6830
53 H A -0.7098
54 Q A -1.1405
55 F A 0.2804
56 A A 0.0000
57 W A 1.1770
58 P A 0.1588
59 F A 0.0000
60 Y A 0.0962
61 Q A -1.1882
62 P A -0.3693
63 V A 0.3786
64 D A -0.7518
65 A A 0.2604
66 I A 1.5342
67 K A -1.1302
68 L A 0.5313
69 N A -0.7475
70 L A 0.0582
71 P A -0.4371
72 D A -1.5509
73 Y A 0.0000
74 H A -1.3025
75 K A -1.9821
76 I A -0.1069
77 I A 0.0000
78 K A -1.9331
79 N A -1.6024
80 P A -0.3110
81 M A 0.0908
82 D A 0.0000
83 M A 0.0000
84 G A 0.0000
85 T A -0.0108
86 I A 0.0000
87 K A -0.9170
88 K A -2.0619
89 R A -0.5283
90 L A 0.0000
91 E A -2.2230
92 N A -1.8292
93 N A -1.2605
94 Y A 1.0449
95 Y A 0.0000
96 W A 1.1787
97 S A 0.1676
98 A A 0.0000
99 S A -0.3710
100 E A -0.8986
101 C A 0.0000
102 M A -0.1049
103 Q A -1.2371
104 D A -0.4200
105 F A 0.0000
106 N A -0.3489
107 T A -0.0540
108 L A 0.0000 mutated: MA108L
109 F A 0.0000
110 T A -0.0150
111 N A 0.0000
112 C A 0.0000
113 Y A 0.0000
114 I A 0.0000
115 Y A 0.2944
116 N A -0.3543
117 K A -1.1308
118 P A -0.2371
119 T A -0.1349
120 D A -0.6649
121 D A -1.7913
122 I A -0.0148
123 V A 0.0000
124 L A 1.5477
125 M A 0.0000
126 A A 0.0000
127 Q A -0.1949
128 A A -0.0221
129 L A 0.0000
130 E A 0.0000
131 K A -0.3435
132 I A 0.3343
133 F A 0.0000
134 L A 0.0000
135 Q A -0.8108
136 K A -0.4090
137 V A 0.0000
138 A A -0.1609
139 Q A -1.1767
140 M A -0.1245
141 P A -0.2789
142 Q A -1.3668
143 E A -1.3854
144 E A -1.9716
23 M B 1.0459
24 P B -0.0646
25 E B -1.1117
26 V B 0.1455
27 S B -0.2148
28 N B -0.5118
29 P B -0.3718
30 S B -0.3055
31 K B -0.3024
32 P B -0.1403
33 G B -0.3259
34 R B -0.9030
35 K B -0.7540
36 T B -0.3133
37 N B -0.9985
38 Q B 0.0000
39 L B 0.0000
40 Q B -1.1673
41 Y B -0.0494
42 M B 0.0000
43 Q B -0.4488
44 N B -1.2355
45 V B 0.1882
46 V B 0.0000
47 V B 0.0000
48 K B -0.7011
49 T B -0.1460
50 L B 0.0000
51 W B -0.0751
52 K B -1.6898
53 H B -0.7219
54 Q B -1.1264
55 F B 0.3717
56 A B 0.0000
57 W B 1.1801
58 P B 0.1764
59 F B 0.0000
60 Y B 0.1839
61 Q B -1.0052
62 P B -0.1754
63 V B 0.4395
64 D B -1.1893
65 A B 0.0000
66 I B 1.5622
67 K B -1.1415
68 L B 0.5141
69 N B -0.8070
70 L B 0.0184
71 P B -0.3607
72 D B -1.0896
73 Y B 0.0000
74 H B -1.3052
75 K B -1.8863
76 I B 0.1606
77 I B 0.0000
78 K B -0.5504
79 N B -0.3976
80 P B -0.0982
81 M B 0.1035
82 D B 0.0000
83 M B 0.0000
84 G B -0.0595
85 T B 0.0000
86 I B 0.0000
87 K B -0.6818
88 K B -1.4381
89 R B -0.3425
90 L B 0.0000
91 E B -2.0228
92 N B -0.8937
93 N B -0.7863
94 Y B 0.0000
95 Y B 0.0000
96 W B 0.2408
97 S B 0.0000
98 A B 0.0000
99 S B 0.0000
100 E B 0.0000
101 C B 0.0000
102 M B 0.1099
103 Q B -0.0915
104 D B 0.0000
105 F B 0.0000
106 N B -0.1341
107 T B 0.0000
108 M B 0.0000
109 F B 0.0000
110 T B 0.0000
111 N B 0.0000
112 C B 0.0000
113 Y B 0.4495
114 I B 0.4923
115 Y B 0.2037
116 N B -0.6383
117 K B -1.8127
118 P B -0.5746
119 T B -0.1988
120 D B -0.7883
121 D B -1.8118
122 I B 0.0005
123 V B 0.0000
124 L B 1.5477
125 M B 0.0000
126 A B 0.0000
127 Q B -0.8200
128 A B -0.1320
129 L B 0.0000
130 E B -0.6697
131 K B -1.6979
132 I B -0.1306
133 F B 0.0000
134 L B 1.1526
135 Q B -0.7884
136 K B -0.4293
137 V B 0.2073
138 A B -0.1133
139 Q B -1.1669
140 M B -0.1404
141 P B -0.3542
142 Q B -1.5580
143 E B -2.0381

 

Laboratory of Theory of Biopolymers 2015