| Chain sequence(s) |
B: GFPCGESCVYIPCFTAAIGCSSCKSKVCYKN
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:27)
[INFO] Main: Simulation completed successfully. (00:00:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | B | -0.6490 | |
| 2 | F | B | 1.0158 | |
| 3 | P | B | 0.1062 | |
| 4 | C | B | 0.3475 | |
| 5 | G | B | -0.3424 | |
| 6 | E | B | -0.3412 | |
| 7 | S | B | 0.0258 | |
| 8 | C | B | 0.0000 | |
| 9 | V | B | 1.6319 | |
| 10 | Y | B | 2.5472 | |
| 11 | I | B | 2.9968 | |
| 12 | P | B | 1.6256 | |
| 13 | C | B | 0.0000 | |
| 14 | F | B | 2.3378 | |
| 15 | T | B | 1.3073 | |
| 16 | A | B | 1.1390 | |
| 17 | A | B | 1.4340 | |
| 18 | I | B | 1.9861 | |
| 19 | G | B | 0.4201 | |
| 20 | C | B | 0.0000 | |
| 21 | S | B | -0.4474 | |
| 22 | C | B | -0.4783 | |
| 23 | K | B | -1.9647 | |
| 24 | S | B | -1.3894 | |
| 25 | K | B | -1.2582 | |
| 26 | V | B | -0.6253 | |
| 27 | C | B | 0.0000 | |
| 28 | Y | B | -0.7248 | |
| 29 | K | B | -1.0796 | |
| 30 | N | B | -1.4773 |