| Chain sequence(s) |
A: GLCCVLLTFGSVRAD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LK7A,LK6A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.467573 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:06)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:34)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:41)
[INFO] Main: Simulation completed successfully. (00:00:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2028 | |
| 2 | L | A | 1.5988 | |
| 3 | C | A | 1.1146 | |
| 4 | C | A | 0.8444 | |
| 5 | V | A | 0.4976 | |
| 6 | K | A | -1.8931 | mutated: LK6A |
| 7 | K | A | -2.0607 | mutated: LK7A |
| 8 | T | A | -0.0539 | |
| 9 | F | A | 1.7052 | |
| 10 | G | A | -0.1398 | |
| 11 | S | A | 0.1089 | |
| 12 | V | A | 1.4070 | |
| 13 | R | A | -1.5073 | |
| 14 | A | A | -0.5626 | |
| 15 | D | A | -1.7798 |