Project name: gp96 peptide [mutate: LK6A, LK7A]

Status: done

Started: 2025-11-12 01:12:30
Settings
Chain sequence(s) A: GLCCVLLTFGSVRAD
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LK7A,LK6A
Energy difference between WT (input) and mutated protein (by FoldX) 0.467573 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:06)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:34)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-2.0607
Maximal score value
1.7052
Average score
-0.0616
Total score value
-0.9235

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2028
2 L A 1.5988
3 C A 1.1146
4 C A 0.8444
5 V A 0.4976
6 K A -1.8931 mutated: LK6A
7 K A -2.0607 mutated: LK7A
8 T A -0.0539
9 F A 1.7052
10 G A -0.1398
11 S A 0.1089
12 V A 1.4070
13 R A -1.5073
14 A A -0.5626
15 D A -1.7798
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Laboratory of Theory of Biopolymers 2018