Project name: query_structure

Status: done

Started: 2025-11-29 10:28:55
Settings
Chain sequence(s) A: GFPCGESCVYLPCFTAAIGCSSCKSSKVCYKN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:27)
Show buried residues

Minimal score value
-1.8537
Maximal score value
2.2357
Average score
0.2338
Total score value
7.0147

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5566
2 F A 1.1089
3 P A 0.2881
4 C A 0.5002
5 G A -0.1887
6 E A -0.0322
7 S A 0.1864
8 C A 0.0000
9 V A 0.9770
10 Y A 1.7317
11 L A 1.5362
12 P A 0.9694
13 C A 0.0000
14 F A 2.2357
15 T A 1.3436
16 A A 1.1948
17 A A 1.4203
18 I A 1.9991
19 G A 0.4573
20 C A 0.0000
21 S A -0.3618
22 C A -0.4005
23 K A -1.8537
24 S A -1.3129
25 K A -1.1296
26 V A -0.3368
27 C A 0.0000
28 Y A -0.4962
29 K A -0.8672
30 N A -1.3978
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Laboratory of Theory of Biopolymers 2018