Project name: Nb_C

Status: done

Started: 2025-07-15 11:59:19
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGELDAPFSKYSLGWFRQAPGQGLEAVAAIDAETGKTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAANPSSAYDPLSPSQYDYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:50)
Show buried residues

Minimal score value
-2.9125
Maximal score value
1.6851
Average score
-0.7736
Total score value
-99.0228

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.3385
2 V A -1.9953
3 Q A -1.5421
4 L A 0.0000
5 V A 0.3177
6 E A 0.0235
7 S A -0.4449
8 G A -0.9340
9 G A -0.0098
10 G A 0.6351
11 L A 1.4088
12 V A -0.1238
13 Q A -1.4401
14 P A -1.8051
15 G A -1.5272
16 G A -1.0139
17 S A -1.3164
18 L A -0.9267
19 R A -2.1757
20 L A 0.0000
21 S A -0.6395
22 C A 0.0000
23 A A -0.4472
24 A A 0.0000
25 S A -1.2498
26 G A -2.1201
27 E A -2.8721
28 L A -1.9430
29 D A -2.4860
30 A A -1.5613
31 P A -1.2708
32 F A 0.0000
33 S A -1.8817
34 K A -2.7041
35 Y A 0.0000
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.6122
43 A A -0.9398
44 P A -0.9808
45 G A -1.2509
46 Q A -1.7667
47 G A -1.0669
48 L A -0.1013
49 E A -0.6587
50 A A -0.2513
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 D A 0.0000
56 A A 0.0000
57 E A -2.6758
58 T A -1.8533
59 G A -1.8876
60 K A -2.0538
61 T A -0.6463
62 Y A -0.2812
63 Y A -0.5053
64 A A -1.2100
65 D A -2.4493
66 S A -1.8039
67 V A 0.0000
68 K A -2.5612
69 G A -1.7559
70 R A -1.5213
71 F A 0.0000
72 T A -0.7633
73 I A 0.0000
74 S A -0.8060
75 R A -1.4199
76 D A -2.0437
77 N A -2.5924
78 S A -1.9344
79 K A -2.5890
80 N A -1.9599
81 T A 0.0000
82 L A 0.0000
83 Y A -0.7103
84 L A 0.0000
85 Q A -1.2559
86 M A 0.0000
87 N A -1.5145
88 S A -1.3871
89 L A 0.0000
90 R A -2.9125
91 A A -2.0228
92 E A -2.4646
93 D A 0.0000
94 T A -0.5178
95 A A 0.0000
96 V A 0.8353
97 Y A 0.0000
98 Y A 0.2711
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 N A -1.1199
103 P A -1.3823
104 S A -0.9789
105 S A -0.9807
106 A A 0.0000
107 Y A 0.6021
108 D A -0.6590
109 P A 0.0000
110 L A 0.0882
111 S A -0.2752
112 P A -0.4984
113 S A -0.8304
114 Q A -0.8932
115 Y A 0.0000
116 D A -1.7760
117 Y A -0.8988
118 W A -0.2528
119 G A -0.3284
120 Q A -1.0272
121 G A -0.0647
122 T A 0.4781
123 L A 1.6851
124 V A 0.0000
125 T A 0.3191
126 V A 0.0000
127 S A -0.7398
128 S A -0.4845
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Laboratory of Theory of Biopolymers 2018