Project name: query_structure

Status: done

Started: 2025-11-29 10:38:11
Settings
Chain sequence(s) A: GTVPCGESCVFIPCITGIAGCSCKNKVCYLN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:30)
Show buried residues

Minimal score value
-2.1459
Maximal score value
2.8206
Average score
0.5465
Total score value
16.9411

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3114
2 T A 0.5076
3 V A 1.5348
4 P A 0.5642
5 C A 0.5707
6 G A -0.1848
7 E A 0.0870
8 S A 0.3507
9 C A 1.0128
10 V A 1.5455
11 F A 2.8206
12 I A 2.7698
13 P A 1.5693
14 C A 1.7699
15 I A 2.5111
16 T A 1.5911
17 G A 1.3318
18 I A 2.2662
19 A A 1.1266
20 G A 0.4198
21 C A 0.0000
22 S A -0.0720
23 C A -0.4483
24 K A -1.6830
25 N A -2.1459
26 K A -1.5416
27 V A -0.7988
28 C A 0.0000
29 Y A 0.1053
30 L A 0.4459
31 N A -0.7738
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018