Project name: bb76bb83cdb3d3f

Status: done

Started: 2025-11-10 17:45:14
Settings
Chain sequence(s) D: VEDFFIVPVSGDPAIDLLQADGNALPSAVKLAYSPASKTNTLVGVLTLVHTNDATKKNVLVKLVTPQLTDVLNPTLQIPVSVQVTVYPVSTTAKEFEAAALGYSASGVNGLVSIVLTVISAAPKTAGTAPTAGNYSGVVSLVMTLG
input PDB
Selected Chain(s) D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with D chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:23)
Show buried residues

Minimal score value
-2.7608
Maximal score value
4.06
Average score
0.0019
Total score value
0.2843

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
42 V D 0.6490
43 E D -1.1240
44 D D -0.5524
45 F D 2.4716
46 F D 3.6038
47 I D 4.0600
48 V D 3.7288
49 P D 2.1222
50 V D 1.8141
51 S D -0.0554
52 G D -1.2995
53 D D -2.6857
54 P D -1.8592
55 A D -1.6475
56 I D 0.0000
57 D D -2.2023
58 L D -0.6939
59 L D -0.4949
60 Q D -0.4002
61 A D -0.3275
62 D D -2.0784
63 G D -1.8334
64 N D -1.8351
65 A D -0.8154
66 L D 0.2464
67 P D -0.0460
68 S D 0.1583
69 A D 0.1238
70 V D 0.1943
71 K D -0.9566
72 L D 0.2149
73 A D 0.2434
74 Y D 0.2595
75 S D -0.2698
76 P D -0.5335
77 A D -0.3890
78 S D -0.7321
79 K D -1.1178
80 T D -0.4468
81 N D 0.2055
82 T D 0.6489
83 L D 1.5319
84 V D 0.9279
85 G D 0.8132
86 V D 1.1848
87 L D 1.7325
88 T D 0.0000
89 L D 0.0000
90 V D 0.0000
91 H D -1.3185
92 T D -1.7385
93 N D -2.2844
94 D D -1.6878
95 A D -1.0301
96 T D -1.1745
97 K D -2.0452
98 K D -2.4697
99 N D 0.0000
100 V D -0.9547
101 L D 0.0000
102 V D 0.8513
103 K D 0.0000
104 L D 2.8152
105 V D 2.8569
106 T D 1.2269
107 P D 0.0000
108 Q D -0.2198
109 L D 0.0170
110 T D 0.1075
111 D D 0.0000
112 V D 1.8611
113 L D 1.8685
114 N D 0.4835
115 P D 0.2721
116 T D 0.0409
117 L D 0.0289
118 Q D -1.1874
119 I D 0.0000
120 P D -0.9193
121 V D 0.0000
122 S D -0.1106
123 V D 0.0000
124 Q D 0.4364
125 V D 0.0000
126 T D 1.7070
127 V D 2.4212
128 Y D 1.9214
129 P D 0.4964
130 V D 0.0000
131 S D 0.4313
132 T D 0.8641
133 T D 0.0305
134 A D -0.2323
135 K D -0.9845
136 E D -2.5258
137 F D 0.0000
138 E D -2.7608
139 A D -1.5916
140 A D -0.6188
141 A D -0.5424
142 L D 0.0000
143 G D 0.2256
144 Y D 0.6728
145 S D -0.0623
146 A D 0.1495
147 S D -0.2656
148 G D -0.4497
149 V D 0.0896
150 N D -1.0763
151 G D -0.8183
152 L D 0.0338
153 V D 0.0000
154 S D 0.9359
155 I D 1.8308
156 V D 0.0000
157 L D 2.0568
158 T D 0.0000
159 V D 1.2004
160 I D 0.7023
161 S D 0.4728
162 A D 0.0000
163 A D -0.5131
164 P D -1.2585
165 K D -1.9639
166 T D -1.0117
167 A D -0.7581
168 G D -0.9232
169 T D -0.7361
170 A D -0.5700
171 P D -0.5813
172 T D -0.3146
173 A D -0.4417
174 G D -0.5249
175 N D -0.7271
176 Y D -0.0432
177 S D -0.0906
178 G D 0.5688
179 V D 1.9940
180 V D 1.9284
181 S D 1.9646
182 L D 1.9380
183 V D 1.6258
184 M D 0.5689
185 T D -0.1790
186 L D -0.8572
187 G D -1.3879
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018