| Chain sequence(s) |
A: GVPTDVKCRGSPQCIQPCKDAGMRFGKCMNGKCHCTPK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:00)
[INFO] Main: Simulation completed successfully. (00:01:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.5894 | |
| 2 | V | A | 0.3526 | |
| 3 | P | A | -0.6450 | |
| 4 | T | A | -1.1658 | |
| 5 | D | A | -2.2372 | |
| 6 | V | A | -1.4553 | |
| 7 | K | A | -2.9138 | |
| 8 | C | A | 0.0000 | |
| 9 | R | A | -2.8351 | |
| 10 | G | A | -2.0026 | |
| 11 | S | A | -1.3398 | |
| 12 | P | A | -1.2238 | |
| 13 | Q | A | -2.2497 | |
| 14 | C | A | 0.0000 | |
| 15 | I | A | -1.2577 | |
| 16 | Q | A | -2.1568 | |
| 17 | P | A | -1.5775 | |
| 18 | C | A | 0.0000 | |
| 19 | K | A | -3.1943 | |
| 20 | D | A | -3.0821 | |
| 21 | A | A | -1.6582 | |
| 22 | G | A | -2.0234 | |
| 23 | M | A | -2.0139 | |
| 24 | R | A | -2.4540 | |
| 25 | F | A | -0.6503 | |
| 26 | G | A | 0.0000 | |
| 27 | K | A | -1.2776 | |
| 28 | C | A | -1.7979 | |
| 29 | M | A | -1.3440 | |
| 30 | N | A | -2.0196 | |
| 31 | G | A | -2.3588 | |
| 32 | K | A | -2.8706 | |
| 33 | C | A | 0.0000 | |
| 34 | H | A | -0.9164 | |
| 35 | C | A | 0.0000 | |
| 36 | T | A | -1.0507 | |
| 37 | P | A | -1.4143 | |
| 38 | K | A | -2.4748 |