CABS-dock: RecA-Cs7

Project name: RecA-Cs7

Status: done

submitted: 2026-01-10 14:52:13, status changed: 2026-01-10 18:06:36

Project settings

Protein sequence(s)	EGLPLVGRVAAGEPLLAQQHIEGHYQVDPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVVIRNGDWL input pdb
Peptide sequence	IEKKGAHQNVHQKLIVA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.1169	2.92681	16.3585	94
cluster_2.pdb ( medoid)	21.4261	5.97402	26.8754	128
cluster_3.pdb ( medoid)	17.1079	8.18337	26.2063	140
cluster_4.pdb ( medoid)	14.8101	3.98378	20.7606	59
cluster_5.pdb ( medoid)	13.5633	9.43722	33.1954	128
cluster_6.pdb ( medoid)	11.3443	14.5447	27.6282	165
cluster_7.pdb ( medoid)	7.90085	8.10039	27.4922	64
cluster_8.pdb ( medoid)	7.45215	8.85651	31.9183	66
cluster_9.pdb ( medoid)	6.07292	18.4425	39.1707	112
cluster_10.pdb ( medoid)	4.93884	8.90898	22.8538	44