CABS-dock: 113d34e3a314c66

Project name: 113d34e3a314c66

Status: done

submitted: 2026-04-14 07:14:34, status changed: 2026-04-14 14:11:57

Project settings

Protein sequence(s)	AQTVPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLINVEAAAQ input pdb
Peptide sequence	KKKKKKKKKK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.3815	4.06895	36.6053	205
cluster_2.pdb ( medoid)	25.4543	4.87148	35.7544	124
cluster_3.pdb ( medoid)	21.8935	5.70944	17.956	125
cluster_4.pdb ( medoid)	20.7699	5.72944	39.2035	119
cluster_5.pdb ( medoid)	9.84957	10.1527	18.8306	100
cluster_6.pdb ( medoid)	7.98255	6.01311	11.8152	48
cluster_7.pdb ( medoid)	6.98001	7.02005	43.0637	49
cluster_8.pdb ( medoid)	6.8508	11.6775	40.6214	80
cluster_9.pdb ( medoid)	6.00393	12.6584	31.1825	76
cluster_10.pdb ( medoid)	5.32173	13.9052	29.7832	74