CABS-dock: leptonychotes cabs

Project name: leptonychotes cabs

Status: done

submitted: 2026-03-13 08:09:42, status changed: 2026-03-13 18:38:12

Project settings

Protein sequence(s)	GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAINPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI input pdb
Peptide sequence	VHRPHLHPSFTAIPAKKIQDKTGI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCHHHHCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.3271	2.49329	12.4048	118
cluster_2.pdb ( medoid)	23.246	5.85046	28.1076	136
cluster_3.pdb ( medoid)	22.7481	5.6708	13.1291	129
cluster_4.pdb ( medoid)	18.9125	5.86912	12.9186	111
cluster_5.pdb ( medoid)	14.493	11.7298	35.899	170
cluster_6.pdb ( medoid)	13.3706	7.77826	24.9605	104
cluster_7.pdb ( medoid)	6.62585	10.2628	33.9444	68
cluster_8.pdb ( medoid)	3.6816	11.9513	40.1356	44
cluster_9.pdb ( medoid)	2.78698	15.4289	42.6328	43
cluster_10.pdb ( medoid)	1.6479	23.6665	48.7606	39