CABS-dock: 11ecb571f0ba817

Project name: 11ecb571f0ba817

Status: done

submitted: 2026-01-19 13:48:05, status changed: 2026-01-20 00:23:52

Project settings

Protein sequence(s)	AQPRDDCQTRCGDVPIDYPFGISTGCYYPGDDSFNITCEEDKPNVLSNIEVLNFNHSGQLRGLIPRSTVCYDQQTNNDFESLWFRLDNLSFSPNNKFTLVGCNAWALLSTFGIQNYSTGCMSLCDTPPPPNSKCNGVGCCRTEVSIPLDSHRIETQPSRFENMTSVEHFNPCSYAFFVEDGMFNFSSLEDLKDLRNVTRFPVLLDWSIGNQTCEQVVGRNICGGNSTCFDSTRGKGYNCKCLQGFDGNPYLSDGCQDINECTTRIHNCSDTSTCENTLGSFHCQCPSGSDLNTTTMSCIDTPKEEPKYL input pdb
Peptide sequence	KDVNFGTPDSTVQNPQDASKPNDSQ
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCHHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.8462	2.02522	15.3105	105
cluster_2.pdb ( medoid)	25.5531	4.42216	20.1783	113
cluster_3.pdb ( medoid)	20.3252	8.01962	38.4318	163
cluster_4.pdb ( medoid)	12.1201	11.8811	28.1176	144
cluster_5.pdb ( medoid)	7.88605	5.32586	15.3491	42
cluster_6.pdb ( medoid)	7.24963	12.9662	28.8866	94
cluster_7.pdb ( medoid)	7.18908	8.34599	27.2485	60
cluster_8.pdb ( medoid)	7.13436	14.5773	36.2012	104
cluster_9.pdb ( medoid)	4.44406	9.00078	28.6844	40
cluster_10.pdb ( medoid)	3.71341	9.42531	22.4803	35