CABS-dock: primed p16

Project name: primed p16

Status: done

submitted: 2025-05-09 14:43:08, status changed: 2025-05-09 19:44:59

Project settings

Protein sequence(s)	TPIATFVSGSPSLNTYNATTVNSSANAFSCAYYLQQWNIQGLLVTSLYLKLDSATMGNRPGDLNSANAKWFTFWVSAYLQQCNPSGIQAGTVSPSTATLTDFEPMANRSVTSPWTYSANGYYEPSIGEFQVFSPVVTGAWNPGNIGIRVLPVPVSASGERYTLLCYSLQCTNASIFNPNNSGTMIVGPVLYSCPAASLP input pdb
Peptide sequence	WWHSYT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	86.1531	1.38126	9.71266	119
cluster_2.pdb ( medoid)	28.6496	4.01402	14.9035	115
cluster_3.pdb ( medoid)	18.8843	7.3606	18.1975	139
cluster_4.pdb ( medoid)	18.6239	8.05416	19.8133	150
cluster_5.pdb ( medoid)	15.6124	8.64699	39.5071	135
cluster_6.pdb ( medoid)	11.0187	6.35283	26.1692	70
cluster_7.pdb ( medoid)	10.859	7.55133	27.8831	82
cluster_8.pdb ( medoid)	7.93029	6.05274	12.6985	48
cluster_9.pdb ( medoid)	7.16482	6.55983	15.6613	47
cluster_10.pdb ( medoid)	5.41322	17.5496	34.734	95