CABS-dock: 12bce929ae9c341

Project name: 12bce929ae9c341

Status: done

submitted: 2026-07-27 05:29:45, status changed: 2026-07-27 07:22:01

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RRIVQVQCGSNKKR
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.0835	6.06493	30.7459	140
cluster_2.pdb ( medoid)	19.6399	6.87375	24.5648	135
cluster_3.pdb ( medoid)	17.5908	7.90184	32.1224	139
cluster_4.pdb ( medoid)	9.90528	12.5186	26.8793	124
cluster_5.pdb ( medoid)	7.63568	13.6203	25.5523	104
cluster_6.pdb ( medoid)	7.14939	14.5467	39.9521	104
cluster_7.pdb ( medoid)	5.23431	14.9017	32.2017	78
cluster_8.pdb ( medoid)	4.44936	14.3841	35.0903	64
cluster_9.pdb ( medoid)	3.73278	16.0738	32.097	60
cluster_10.pdb ( medoid)	3.02422	17.1945	36.6513	52