CABS-dock: 12ea8834ab85507

Project name: 12ea8834ab85507

Status: done

submitted: 2026-06-13 14:19:54, status changed: 2026-06-13 22:40:25

Project settings

Protein sequence(s)	MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG input pdb
Peptide sequence	FLPPLQPAVMVPFLQPKVM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.4783	5.41637	17.5104	138
cluster_2.pdb ( medoid)	16.4007	8.35328	28.4629	137
cluster_3.pdb ( medoid)	12.6642	11.2127	30.5523	142
cluster_4.pdb ( medoid)	12.5441	13.1536	38.2942	165
cluster_5.pdb ( medoid)	11.3184	8.21672	32.6636	93
cluster_6.pdb ( medoid)	9.87594	4.05025	33.5571	40
cluster_7.pdb ( medoid)	9.84679	12.2883	35.7562	121
cluster_8.pdb ( medoid)	4.86758	11.9156	39.3632	58
cluster_9.pdb ( medoid)	4.63955	14.8721	45.5488	69
cluster_10.pdb ( medoid)	2.45315	15.0826	41.715	37