CABS-dock: cabs-dock-test1

Project name: cabs-dock-test1

Status: done

submitted: 2026-07-23 01:59:05, status changed: 2026-07-23 03:29:24

Project settings

Protein sequence(s)	STPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDMDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVTEPLVLKSGNRIVMGKNHVFRFNH input pdb
Peptide sequence	EHGAPEDENR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	27.9713	4.75487	25.2254	133
cluster_2.pdb ( medoid)	24.3434	5.50456	24.2415	134
cluster_3.pdb ( medoid)	15.2472	7.21444	15.7587	110
cluster_4.pdb ( medoid)	14.5816	12.2757	29.7698	179
cluster_5.pdb ( medoid)	13.8105	7.60291	30.1625	105
cluster_6.pdb ( medoid)	13.5334	5.91129	19.9095	80
cluster_7.pdb ( medoid)	7.65711	10.3172	21.6321	79
cluster_8.pdb ( medoid)	6.45611	10.8424	23.4934	70
cluster_9.pdb ( medoid)	4.75064	14.1034	27.1823	67
cluster_10.pdb ( medoid)	3.53822	12.153	24.3316	43