CABS-dock: 1482860aee8f93b

Project name: 1482860aee8f93b

Status: done

submitted: 2026-07-08 11:07:40, status changed: 2026-07-08 14:51:11

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	GNTRSAKNGRGFLD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.8577	5.99436	26.8438	155
cluster_2.pdb ( medoid)	21.9035	7.7613	31.4626	170
cluster_3.pdb ( medoid)	21.6192	6.29069	28.6725	136
cluster_4.pdb ( medoid)	13.8742	6.12647	19.1351	85
cluster_5.pdb ( medoid)	12.5612	4.53778	15.4033	57
cluster_6.pdb ( medoid)	10.5603	10.1322	29.9167	107
cluster_7.pdb ( medoid)	9.20132	5.21664	18.5973	48
cluster_8.pdb ( medoid)	7.19719	17.229	43.0146	124
cluster_9.pdb ( medoid)	4.7445	15.3862	42.8098	73
cluster_10.pdb ( medoid)	4.60396	9.7742	28.3932	45