CABS-dock: PEPTIDE27

Project name: PEPTIDE27

Status: done

submitted: 2025-07-02 11:48:07, status changed: 2025-07-02 15:47:13

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	IFFFFFL
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.1014	3.68565	12.5941	122
cluster_2.pdb ( medoid)	22.825	6.22124	14.7249	142
cluster_3.pdb ( medoid)	21.0126	13.5633	34.5415	285
cluster_4.pdb ( medoid)	12.4525	9.8775	26.4948	123
cluster_5.pdb ( medoid)	9.1117	6.2557	11.8196	57
cluster_6.pdb ( medoid)	8.20066	13.7794	31.4871	113
cluster_7.pdb ( medoid)	5.85002	6.15383	20.9294	36
cluster_8.pdb ( medoid)	5.48204	7.11415	14.2006	39
cluster_9.pdb ( medoid)	5.43225	9.57245	26.6874	52
cluster_10.pdb ( medoid)	2.62667	11.802	29.0663	31