CABS-dock: SC2QL17

Project name: SC2QL17_RecA

Status: done

submitted: 2025-11-13 13:59:36, status changed: 2025-11-13 20:00:04

Project settings

Protein sequence(s)	DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL input pdb
Peptide sequence	QKAIHVKQAILGKHVNE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHHHCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.2095	7.42908	37.2462	217
cluster_2.pdb ( medoid)	20.039	5.09007	18.6702	102
cluster_3.pdb ( medoid)	14.44	7.54845	30.9481	109
cluster_4.pdb ( medoid)	14.389	4.03086	14.5601	58
cluster_5.pdb ( medoid)	12.2707	12.4687	27.9223	153
cluster_6.pdb ( medoid)	7.96479	5.90097	24.9044	47
cluster_7.pdb ( medoid)	7.76623	6.43813	22.1791	50
cluster_8.pdb ( medoid)	6.51757	16.1103	36.4192	105
cluster_9.pdb ( medoid)	6.00852	16.8095	38.1059	101
cluster_10.pdb ( medoid)	4.48445	12.9336	36.9901	58