CABS-dock: MAD20

Project name: MAD20_USP7[2]

Status: done

submitted: 2026-01-13 17:02:47, status changed: 2026-01-13 21:13:00

Project settings

Protein sequence(s)	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW input pdb
Peptide sequence	TSTPGSSGSVT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	50.5791	3.71695	17.5519	188
cluster_2.pdb ( medoid)	33.0621	3.62954	15.5638	120
cluster_3.pdb ( medoid)	32.6324	4.22893	21.1761	138
cluster_4.pdb ( medoid)	20.4897	6.68628	31.4329	137
cluster_5.pdb ( medoid)	14.8984	5.16835	26.772	77
cluster_6.pdb ( medoid)	12.2752	6.92452	26.0959	85
cluster_7.pdb ( medoid)	11.4058	9.64426	31.0234	110
cluster_8.pdb ( medoid)	5.73178	13.2594	32.6413	76
cluster_9.pdb ( medoid)	2.72273	13.5893	27.9968	37
cluster_10.pdb ( medoid)	2.10513	15.201	29.3847	32