CABS-dock: 197d1f76a7359b6

Project name: 197d1f76a7359b6

Status: done

submitted: 2025-12-26 00:59:54, status changed: 2025-12-26 23:40:02

Project settings

Protein sequence(s)	EEPLVVKVEEGDNAVLQCLKGTSDGPTQQLTWSRESPLKPFLKLSLGLPGLGIHMRPLAIWLFIFNVSQQMGGFYLCQPGPPSEKAWQPGWTVNVEGSGELFRWNVSDLGGLGCGLKNRSSEGPSSPSGKLMSPKLYVWAKDRPEIWEGEPPCLPPRDSLNQSLSQDLTMAPGSTLWLSCGVPPDSVSRGPLSWTHVHPKGPKSLLSLELKDDRPARDMWVMETGLLLPRATAQDAGKYYCHRGNLTMSFHLEITARPVLWHWLLRTGGWKVSAVTLAYLIFCLCSLVGILHLQRALCIKYLLFVFNFVFWLAGGVILGVALWLRHDPQTTNLLYLELGDKPAPNTFYVGIYILIAVGAVMMFVGFLGCYGACLLGTFFTCLVILFACEVAAGIWGFVNDQIAKDVKQFYDQALQQAVVNNAKAVVKTFHETLDCCGSSTLTALTTSNLCPSGSNIISNLFKEDCHQKIDDLFSGKLYLIGIAAIVVAVIMIFEMILSMVL input pdb
Peptide sequence	LLIYGASSRATGI
Simulation mc cycles	50
Peptide secondary structure psipred	CCEECCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	41.9702	4.50319	11.2582	189
cluster_2.pdb ( medoid)	35.5788	2.50149	9.56605	89
cluster_3.pdb ( medoid)	30.6415	4.17734	19.7127	128
cluster_4.pdb ( medoid)	22.2936	8.97118	19.2138	200
cluster_5.pdb ( medoid)	14.1867	7.11935	24.2732	101
cluster_6.pdb ( medoid)	13.8747	6.34248	17.1858	88
cluster_7.pdb ( medoid)	11.2468	8.53574	18.8251	96
cluster_8.pdb ( medoid)	7.19812	4.58453	10.3887	33
cluster_9.pdb ( medoid)	6.3568	6.13516	15.6443	39
cluster_10.pdb ( medoid)	4.65858	7.94233	15.572	37