CABS-dock: trial4leb

Project name: trial4leb

Status: done

submitted: 2025-10-09 00:21:23, status changed: 2025-10-09 06:07:40

Project settings

Protein sequence(s)	GKTITGVFNSFNSLTWSNAATYNYKGPGTPTWNAVLGWSLDGTSASPGDTFTLNMPCVFKFTTSQTSVDLTAHGVKYATCQFQAGEEFMTFSTLTCTVSNTLTPSIKALGTVTLPLAFNVGGTGSSVDLEDSKCFTAGTNTVTFNDGGKKISINVDFERSNVDPKGYLTDSRVIPSLNKVSTLFVAPQCANGYTSGTMGFANTYGDVQIDCSNIHVGITKGLNDWNYPVSSESFSYTKTCSSNGIFITYKNVPAGYRPFVDAYISATDVNSYTLSYANEYTCAGGYWQRAPFTLRWTGYTTTTTTT input pdb
Peptide sequence	NMAIHPR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.3484	3.74807	41.0928	110
cluster_2.pdb ( medoid)	20.3162	6.74339	34.9845	137
cluster_3.pdb ( medoid)	17.5265	7.36027	52.5985	129
cluster_4.pdb ( medoid)	15.9885	6.8174	20.377	109
cluster_5.pdb ( medoid)	11.8399	8.61495	31.5501	102
cluster_6.pdb ( medoid)	9.14598	9.62171	32.6538	88
cluster_7.pdb ( medoid)	6.29716	14.2922	42.5972	90
cluster_8.pdb ( medoid)	5.34227	12.7287	37.7447	68
cluster_9.pdb ( medoid)	5.07173	17.1539	40.8364	87
cluster_10.pdb ( medoid)	4.67735	17.1037	42.6354	80