CABS-dock: 1MMC

Project name: 1MMC

Status: done

submitted: 2025-04-22 03:30:31, status changed: 2025-04-22 06:30:13

Project settings

Protein sequence(s)	NEPPLVFHWFPLIGSTITYGMDPPRFFKENRAKYGECFTFVLLGKKTTVYLGTQGNDFILNGKIRDVCAEEIYTVLTTPVFGKDVVYDCPNSKLMEQKKFMKVALTTDAFRSYVPIISDEVTSYFKRTSDFKGQSGIVNICPKMAQITIFTASHALQGKEIRSKFDESLADLYHDLDMGFSPINFKLHWAPLPWNQRRDHAQRTIAKIYMDTIKSRRARGETDAKDIMWHLMNSEYKNGVKVPDHEIAHMMIALLMAGQHSSSSTSSWIMLRLASRPDIMEELYQEQVKNLGADLPPLKYEDLAKLPLNQAIVKETLRLHAPIHSIMRAVKQPMPIPGTKYVIPTNHVLLAAPGVSASDPQYFPEPDLWEPHRWEKESPLAPSIVRNEAAEEDEEKVDYGYGLVSKGAGSPYLPFGAGRHRCIGEQFANVQLQTIVAMTVRLFKFRNVDSSNKVIGTDYASLFSRPLEPANIYWERR input pdb
Peptide sequence	VGECVRGRCPSGMCCSQFGYCGKGPKYCGR
Simulation mc cycles	10
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	63.8465	1.56626	4.55812	100
cluster_2.pdb ( medoid)	39.2591	3.20944	13.036	126
cluster_3.pdb ( medoid)	15.7069	6.36664	11.1507	100
cluster_4.pdb ( medoid)	14.6844	6.80995	13.2257	100
cluster_5.pdb ( medoid)	9.6131	9.15418	18.337	88
cluster_6.pdb ( medoid)	8.23147	26.3622	55.7939	217
cluster_7.pdb ( medoid)	6.76301	16.8564	53.9466	114
cluster_8.pdb ( medoid)	5.73392	9.59204	19.7185	55
cluster_9.pdb ( medoid)	5.51338	13.2405	23.6582	73
cluster_10.pdb ( medoid)	1.80264	14.9781	27.5785	27