CABS-dock: CAHWSGNCC

Project name: CAHWSGNCC - b

Status: done

submitted: 2026-02-17 15:26:37, status changed: 2026-02-18 08:51:05

Project settings

Protein sequence(s)	QPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSSEKEEREREEVQLVQSGAEVKKPGESLKISCKGSGYSFTSYWIGWVRQMPGKGLEWMGIIYPGDSDTRYSPSFQGQVTISADKSISTAYLQWSSLKASDTAMYYCARHYYYYYGMDVWGQGTTVTVSSWSASAPTLFPLVSCVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVTDEHVVCKVQHPNGNKEKNVPLPSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVAP input pdb
Peptide sequence	CAHWSGNCC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.6307	7.88117	40.9397	202
cluster_2.pdb ( medoid)	17.8217	8.08001	34.9581	144
cluster_3.pdb ( medoid)	13.4068	12.2326	43.2449	164
cluster_4.pdb ( medoid)	10.7738	9.65303	41.0304	104
cluster_5.pdb ( medoid)	8.92519	11.3163	26.6611	101
cluster_6.pdb ( medoid)	7.97239	11.4144	25.0144	91
cluster_7.pdb ( medoid)	6.78252	11.5001	35.9017	78
cluster_8.pdb ( medoid)	4.37387	10.517	37.7588	46
cluster_9.pdb ( medoid)	3.82594	11.5005	38.9593	44
cluster_10.pdb ( medoid)	1.39363	18.6563	49.6756	26