CABS-dock: 1507_1.deneme

Project name: 1507_1.deneme_sekans87

Status: done

submitted: 2025-08-02 19:14:21, status changed: 2025-08-04 11:03:21

Project settings

Protein sequence(s)	IRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTIRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST input pdb
Peptide sequence	QSAGITASSVISQR
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.1729	6.92155	24.996	195
cluster_2.pdb ( medoid)	24.6676	9.93207	29.9818	245
cluster_3.pdb ( medoid)	18.6764	9.15594	27.775	171
cluster_4.pdb ( medoid)	10.748	8.28061	18.356	89
cluster_5.pdb ( medoid)	6.27394	13.8669	37.2422	87
cluster_6.pdb ( medoid)	4.74299	14.1261	33.2994	67
cluster_7.pdb ( medoid)	4.08655	10.767	27.7145	44
cluster_8.pdb ( medoid)	3.61841	9.39638	18.0543	34
cluster_9.pdb ( medoid)	2.2863	18.8077	45.6837	43
cluster_10.pdb ( medoid)	1.81383	13.783	23.4362	25