CABS-dock: 1ab8ca41e4ada9

Project name: 1ab8ca41e4ada9

Status: done

submitted: 2026-04-04 13:47:59, status changed: 2026-04-04 17:42:25

Project settings

Protein sequence(s)	GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	QNCASCLG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.3328	3.49659	48.6823	169
cluster_2.pdb ( medoid)	37.4967	4.37372	40.6571	164
cluster_3.pdb ( medoid)	26.441	7.11017	33.249	188
cluster_4.pdb ( medoid)	15.7111	5.4102	13.7344	85
cluster_5.pdb ( medoid)	9.77693	4.60267	7.86749	45
cluster_6.pdb ( medoid)	6.81279	11.1555	30.6726	76
cluster_7.pdb ( medoid)	6.56301	10.8182	36.9791	71
cluster_8.pdb ( medoid)	6.34913	10.8676	22.3508	69
cluster_9.pdb ( medoid)	5.24682	15.8191	33.8846	83
cluster_10.pdb ( medoid)	3.27859	15.2505	40.3273	50