CABS-dock: 1ae0f56ea463d59

Project name: 1ae0f56ea463d59

Status: done

submitted: 2025-12-23 09:10:37, status changed: 2025-12-23 11:23:27

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RVIFVQCGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	46.9486	2.23649	22.0561	105
cluster_2.pdb ( medoid)	25.958	6.62609	19.3063	172
cluster_3.pdb ( medoid)	22.5043	3.15495	8.56472	71
cluster_4.pdb ( medoid)	19.5804	7.96715	21.5304	156
cluster_5.pdb ( medoid)	19.4123	5.6665	20.6519	110
cluster_6.pdb ( medoid)	19.0656	6.13672	25.0421	117
cluster_7.pdb ( medoid)	18.2227	5.54254	20.5853	101
cluster_8.pdb ( medoid)	9.78132	6.74756	19.3429	66
cluster_9.pdb ( medoid)	8.01128	8.98733	24.2858	72
cluster_10.pdb ( medoid)	2.79365	10.7386	23.581	30