CABS-dock: BLIND_PEP02

Project name: BLIND_PEP02_R2

Status: done

submitted: 2026-07-23 16:50:49, status changed: 2026-07-23 21:31:43

Project settings

Protein sequence(s)	KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK input pdb
Peptide sequence	KSYSYDAPSDFINFSSK
Simulation mc cycles	50
Peptide secondary structure	CCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	54.687	2.23088	12.5928	122
cluster_2.pdb ( medoid)	34.4773	2.92946	29.0841	101
cluster_3.pdb ( medoid)	30.8459	4.47385	12.3189	138
cluster_4.pdb ( medoid)	26.0395	3.6099	10.9979	94
cluster_5.pdb ( medoid)	23.5642	6.19583	14.3837	146
cluster_6.pdb ( medoid)	19.7608	3.64357	13.8989	72
cluster_7.pdb ( medoid)	18.2128	9.4988	41.4937	173
cluster_8.pdb ( medoid)	12.2695	4.72715	12.7248	58
cluster_9.pdb ( medoid)	4.5848	16.1403	38.6359	74
cluster_10.pdb ( medoid)	1.59165	13.8221	27.2279	22