CABS-dock: ActivinA_Design

Project name: ActivinA_Design_5

Status: done

submitted: 2026-02-20 15:30:29, status changed: 2026-02-20 17:29:33

Project settings

Protein sequence(s)	RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLP input pdb
Peptide sequence	SEAEELRRLNEERRALQRAR
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.1102	5.29427	33.4749	170
cluster_2.pdb ( medoid)	25.6031	6.5617	29.0262	168
cluster_3.pdb ( medoid)	23.1528	6.69464	31.8366	155
cluster_4.pdb ( medoid)	13.5785	5.96533	29.9663	81
cluster_5.pdb ( medoid)	10.636	10.0602	32.85	107
cluster_6.pdb ( medoid)	8.9546	8.15223	19.605	73
cluster_7.pdb ( medoid)	8.11411	14.1728	32.0033	115
cluster_8.pdb ( medoid)	6.86943	10.7724	21.3271	74
cluster_9.pdb ( medoid)	5.76413	6.07204	26.8304	35
cluster_10.pdb ( medoid)	2.19244	10.0345	17.7868	22