CABS-dock: 1c623a112fe96de

Project name: 1c623a112fe96de

Status: done

submitted: 2025-08-24 20:38:39, status changed: 2025-08-24 23:32:46

Project settings

Protein sequence(s)	SGNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNSQVIGASVDSHFEHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVSPAGWKPGSDTIKP input pdb
Peptide sequence	NDIEYNADSELKNHGARQLY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCHHHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	21.1777	6.51628	29.4798	138
cluster_2.pdb ( medoid)	16.7228	5.38187	13.0027	90
cluster_3.pdb ( medoid)	16.3058	7.54333	24.9544	123
cluster_4.pdb ( medoid)	15.5265	8.4372	34.1183	131
cluster_5.pdb ( medoid)	10.7603	8.92169	18.4104	96
cluster_6.pdb ( medoid)	10.0464	13.5372	39.5432	136
cluster_7.pdb ( medoid)	9.90305	5.45287	21.2647	54
cluster_8.pdb ( medoid)	7.69248	8.7098	28.0001	67
cluster_9.pdb ( medoid)	6.45176	16.8946	37.3988	109
cluster_10.pdb ( medoid)	4.01754	13.9389	30.362	56