CABS-dock: 1c87df698cb460

Project name: 1c87df698cb460

Status: done

submitted: 2026-07-09 10:06:00, status changed: 2026-07-09 13:32:38

Project settings

Protein sequence(s)	MDGSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGVLTASLTIWKKMG input pdb
Peptide sequence	AKAAHLHWLS
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.0324	3.52952	24.4117	106
cluster_2.pdb ( medoid)	26.4311	4.91845	23.2514	130
cluster_3.pdb ( medoid)	21.891	6.34964	18.5928	139
cluster_4.pdb ( medoid)	14.2231	9.91343	27.912	141
cluster_5.pdb ( medoid)	12.6076	6.66264	21.6096	84
cluster_6.pdb ( medoid)	10.9697	9.02485	18.4293	99
cluster_7.pdb ( medoid)	10.4366	12.4562	25.946	130
cluster_8.pdb ( medoid)	9.0019	6.332	13.6849	57
cluster_9.pdb ( medoid)	8.20758	9.13789	18.8659	75
cluster_10.pdb ( medoid)	5.12131	7.61523	27.4581	39