CABS-dock: 1cf3787399c6c82

Project name: 1cf3787399c6c82

Status: done

submitted: 2026-04-20 02:16:44, status changed: 2026-04-20 09:12:16

Project settings

Protein sequence(s)	GEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLMDEEDMDDVVDADEYLIP input pdb
Peptide sequence	GIGKFLHSAKKFGKAFVGEIMNS
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHHHHHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.1916	3.59693	25.4605	105
cluster_2.pdb ( medoid)	20.7115	7.67691	25.767	159
cluster_3.pdb ( medoid)	16.4665	9.59525	31.8392	158
cluster_4.pdb ( medoid)	15.8625	8.32149	26.4997	132
cluster_5.pdb ( medoid)	15.0357	6.3183	28.4316	95
cluster_6.pdb ( medoid)	14.2954	7.27504	33.1454	104
cluster_7.pdb ( medoid)	9.82973	5.29007	21.5938	52
cluster_8.pdb ( medoid)	8.45191	11.595	45.1372	98
cluster_9.pdb ( medoid)	4.9434	14.5649	30.5364	72
cluster_10.pdb ( medoid)	1.82464	13.7013	27.6518	25