CABS-dock: LVTLGASDKAYPTHSQSSLREGDMHLQMNL

Project name: LVTLGASDKAYPTHSQSSLREGDMHLQMNL_FAPdock

Status: done

submitted: 2025-10-07 22:05:37, status changed: 2025-10-08 03:23:48

Project settings

Protein sequence(s)	IQLPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS input pdb
Peptide sequence	LVTLGASDKAYPTHSQSSLREGDMHLQMNL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCHHCCCCCEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	60.8637	1.64302	3.35246	100
cluster_2.pdb ( medoid)	42.9784	2.51289	18.4915	108
cluster_3.pdb ( medoid)	26.2773	3.99584	23.1476	105
cluster_4.pdb ( medoid)	24.4787	4.28944	33.1883	105
cluster_5.pdb ( medoid)	20.3265	5.11648	29.0895	104
cluster_6.pdb ( medoid)	9.96937	12.6387	31.7886	126
cluster_7.pdb ( medoid)	8.74237	12.9256	32.23	113
cluster_8.pdb ( medoid)	8.48576	10.606	36.0133	90
cluster_9.pdb ( medoid)	8.11249	11.8336	23.7062	96
cluster_10.pdb ( medoid)	2.68055	19.7721	33.0691	53