CABS-dock: 1ddb7e2b913e4fe

Project name: 1ddb7e2b913e4fe

Status: done

submitted: 2025-12-29 08:47:17, status changed: 2025-12-29 10:45:25

Project settings

Protein sequence(s)	MVTKYGRNLGLNKVELFAIWAVLVVALLLTTANIYWIADQFGIHLATGTARKLLDAMASGASLGTAFAAILGVTLPAWALAAAGALGATAA input pdb
Peptide sequence	RGKYALADA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	49.1299	3.13455	16.27	154
cluster_2.pdb ( medoid)	30.4766	3.51089	33.5016	107
cluster_3.pdb ( medoid)	29.1296	3.77623	30.5185	110
cluster_4.pdb ( medoid)	23.8846	3.89373	24.45	93
cluster_5.pdb ( medoid)	19.8408	5.74573	24.4115	114
cluster_6.pdb ( medoid)	18.3052	4.42498	13.2558	81
cluster_7.pdb ( medoid)	13.0065	7.45779	17.6128	97
cluster_8.pdb ( medoid)	10.9217	11.8114	31.1137	129
cluster_9.pdb ( medoid)	10.2726	4.47793	8.12969	46
cluster_10.pdb ( medoid)	5.70627	12.092	27.0762	69