CABS-dock: 1e3cf931749db4

Project name: 1e3cf931749db4

Status: done

submitted: 2026-07-08 11:08:41, status changed: 2026-07-08 14:51:31

Project settings

Protein sequence(s)	GSHMMLEADLELERAADVRRWEEQAEISSGSSSPPILSSISIKNEEEEQTLGLLEDGAYRIKQKGILGYSQIGAGVYYKEGTFHTMWHVTRRRGAVLMHKGKRIEPSWADVKKDLISYGGGGWKLEGEWKEGEEVQVLLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVVVTRSGAYYVSAIAN input pdb
Peptide sequence	GVRVLAVHESKGD
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEEECCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.4074	6.4548	26.7551	164
cluster_2.pdb ( medoid)	24.3682	4.51407	28.2193	110
cluster_3.pdb ( medoid)	23.8408	6.58534	22.8863	157
cluster_4.pdb ( medoid)	11.5237	8.59098	29.7313	99
cluster_5.pdb ( medoid)	11.279	9.75266	24.7519	110
cluster_6.pdb ( medoid)	11.1101	6.48057	19.8485	72
cluster_7.pdb ( medoid)	10.3444	7.63697	28.9286	79
cluster_8.pdb ( medoid)	7.90991	8.59681	27.9831	68
cluster_9.pdb ( medoid)	5.73716	13.7699	26.6653	79
cluster_10.pdb ( medoid)	5.1524	12.0332	34.741	62